DRSC/TRiP Functional Genomics Resources

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Protein Alignment mid and Tbx3

DIOPT Version :9

Sequence 1:NP_001260096.1 Gene:mid / 33770 FlyBaseID:FBgn0261963 Length:580 Species:Drosophila melanogaster
Sequence 2:NP_853669.1 Gene:Tbx3 / 353305 RGDID:735203 Length:743 Species:Rattus norvegicus


Alignment Length:486 Identity:157/486 - (32%)
Similarity:228/486 - (46%) Gaps:101/486 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 GAVAQ------TASAESQLNTSSTSSQGRCSTPPQSPGTEDSEERLTPEPVQKAPKIVGSCNCDD 182
            ||:|:      ..:||:.:..||...|... .|.::...|        |.|:..||:        
  Rat    58 GALAKPIMDQLVGAAETGIPFSSLGPQAHL-RPLKTMEPE--------EDVEDDPKV-------- 105

  Fly   183 LKPVQCHLETKELWDRFHDLGTEMIITKTGRRMFPTVRVSFSGPLRQIQPADRYAVLMDIIPMDS 247
                  |||.|||||:||..||||:|||:||||||..:|..||    :....:|.:|||||..|.
  Rat   106 ------HLEAKELWDQFHKRGTEMVITKSGRRMFPPFKVRCSG----LDKKAKYILLMDIIAADD 160

  Fly   248 KRYRYAYHRSAWLVAGKADPAPPARLYAHPDSPFSCEALRKQVISFEKVKLTNNEMDKNG----- 307
            .||:  :|.|.|:|||||||..|.|:|.|||||.:.|....:|::|.|:|||||..||:|     
  Rat   161 CRYK--FHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTLAF 223

  Fly   308 ---------------QIVLNSMHRYQPRIHLVRLSHGQSIPSNPKELQDLDHKTYVFPETVFTAV 357
                           |.:|||||:||||.|:||.:....:|.:       ..:||:||||.|.||
  Rat   224 PSDHATWQGNYSFGTQTILNSMHKYQPRFHIVRANDILKLPYS-------TFRTYLFPETEFIAV 281

  Fly   358 TAYQNQLITKLKIDSNPFAKGFRDSSRLTDFDRDPMEALLLEQQLRSPLRLFPDPLMQQFAAQGD 422
            |||||..||:||||:|||||||||:.   :..|:..:.|.|:.     :|:|.:...::.....:
  Rat   282 TAYQNDKITQLKIDNNPFAKGFRDTG---NGRREKRKQLTLQS-----MRVFDERHKKETGTSDE 338

  Fly   423 PSS----MALFEKARQHLQMFGGNSPYAQLMMPQMYQAAAAAAGPPPPPPGLGAFHMFQQQWPQL 483
            .||    ...|.:|........|.|....| .|...::.|.|...             ::..|:.
  Rat   339 SSSEQAAFNCFAQASSPAVSTVGTSNLKDL-CPSEAESDAEAESK-------------EEHGPEA 389

  Fly   484 --TAGFLASANQQAAAAQAAAQAQAQ---AQAAAAAMAANRTPPPPPTASTPSSTSSGSPSPDMR 543
              ||....:..::....:.:...:||   |:.:.|...|......|.:..:|::.||.:..|.. 
  Rat   390 CDTAKISTTTAEEPGRDKGSPATRAQLFPAEPSRARDTARLDKASPDSRHSPATISSSTRVPGA- 453

  Fly   544 PRQYQRFSPYQLPGGQGPPSSAAGSPPAVNA 574
                   ..::.||.:||.|:......|:.|
  Rat   454 -------DEHRSPGREGPVSAKVDEARALPA 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
midNP_001260096.1 TBOX 185..384 CDD:238106 108/218 (50%)
Tbx3NP_853669.1 T-box_TBX2_3-like 101..305 CDD:410314 108/230 (47%)
TBX 323..404 CDD:403708 15/94 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 371..467 19/116 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335212
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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