DRSC/TRiP Functional Genomics Resources

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Protein Alignment mid and tbx16

DIOPT Version :9

Sequence 1:NP_001260096.1 Gene:mid / 33770 FlyBaseID:FBgn0261963 Length:580 Species:Drosophila melanogaster
Sequence 2:NP_571133.1 Gene:tbx16 / 30264 ZFINID:ZDB-GENE-990615-5 Length:470 Species:Danio rerio


Alignment Length:488 Identity:157/488 - (32%)
Similarity:211/488 - (43%) Gaps:161/488 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 PPQSPGTEDSEERLTPEPVQKAPKIVGSCNCDDLKPVQCHLETKELWDRFHDLGTEMIITKTGRR 214
            ||..||..||..:             |:        ::..||..|||..||::||||||||.|||
Zfish    16 PPSMPGAGDSYHQ-------------GN--------IRMTLEDPELWRSFHEIGTEMIITKPGRR 59

  Fly   215 MFPTVRVSFSGPLRQIQPADRYAVLMDIIPMDSKRYRYAYHRSAWLVAGKADPAPPARLYAHPDS 279
            |||..::|.||    :.|..:|.:|:|::|.|..||:  :::..|.|||||:|.||.|.|.||||
Zfish    60 MFPHCKISLSG----LVPYAKYILLVDMVPEDGLRYK--WNKDKWEVAGKAEPQPPYRTYLHPDS 118

  Fly   280 PFSCEALRKQVISFEKVKLTNNEMDKNGQIVLNSMHRYQPRIHLVRLSHGQSIPSNPKELQDLDH 344
            |.......||.:||.|:|||||.:|::|.|:|:|||||.||.|:|:.....|:..:.       .
Zfish   119 PAPGSHWMKQPVSFLKLKLTNNALDQHGHIILHSMHRYHPRFHIVQADDLYSVRWSV-------F 176

  Fly   345 KTYVFPETVFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRLTDFDRDPMEALLLEQQLRSPLRLF 409
            :|:.||||.|||||||||..|||||||.|||||||||..               ....|...|..
Zfish   177 QTFTFPETSFTAVTAYQNTKITKLKIDHNPFAKGFRDEG---------------TNSKRRANRNL 226

  Fly   410 PDP-----LMQQFAAQGDP------SSMALFEK--ARQHLQM-------FGG------------N 442
            |||     .|.:.:..|.|      |..||.::  .|:.|::       :||            .
Zfish   227 PDPERVAKKMSKDSEHGSPQDVQPSSCEALDDEHAGRKELEVKAERYSPWGGACDRDSGHALRPE 291

  Fly   443 SPY---------AQLMMP-----QMYQ-------------------AAAAAAGPP---------- 464
            ||.         ::.::|     |.|:                   :|..:||.|          
Zfish   292 SPLGSDHRDVYSSEQLVPGQNTYQPYRFHEYGKSPSPSSSSSVGGSSACGSAGRPSFESRVLDVA 356

  Fly   465 -------------------PPPPGLGAFHMFQQQWPQLTAGFLASANQQAAAAQAA--------A 502
                               ||.|..|     .|::    ||.|..|..||......        :
Zfish   357 TVPDTDSSSKPSSAPEFSLPPHPSAG-----HQEY----AGVLNMAITQAKPGMLGTHPLYSHYS 412

  Fly   503 QAQAQAQAAAAAMAANRTPPPPPTASTPSSTSS 535
            ..|:..|.:.|| |:...|||||....|:..||
Zfish   413 TEQSLGQWSGAA-ASQYPPPPPPHHHLPTEYSS 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
midNP_001260096.1 TBOX 185..384 CDD:238106 102/198 (52%)
tbx16NP_571133.1 TBOX 30..217 CDD:238106 102/222 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574492
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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