DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mid and tbx15

DIOPT Version :9

Sequence 1:NP_001260096.1 Gene:mid / 33770 FlyBaseID:FBgn0261963 Length:580 Species:Drosophila melanogaster
Sequence 2:NP_001315362.1 Gene:tbx15 / 246222 ZFINID:ZDB-GENE-020529-1 Length:616 Species:Danio rerio


Alignment Length:556 Identity:187/556 - (33%)
Similarity:249/556 - (44%) Gaps:142/556 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 RNSGGAVAQTASA---------------------ESQLNTSSTSSQGRCSTPPQSPGTEDSEERL 163
            |.|..|::..|.|                     |.:|:..|.:|.|      |....||....|
Zfish     5 RRSAAALSSRAHAFSVEALIGTNKKRKLRGWEEKELELSMESLASNG------QLGDGEDPANCL 63

  Fly   164 TPEPVQKA-------------------PKIVGSCNCD-----DLKPVQCHLETKELWDRFHDLGT 204
            ..:|..:|                   |..:.|..||     .::.:|..|:..:||.||||:||
Zfish    64 DIDPDSEASPGSDGEGLAERTSCSFGSPADLTSAACDPSPSASMEEIQVELQCADLWKRFHDIGT 128

  Fly   205 EMIITKTGRRMFPTVRVSFSGPLRQIQPADRYAVLMDIIPMDSKRYRYAYHRSAWLVAGKADPAP 269
            ||||||.||||||.:||...|    :.|..:|.:.|||:|:|:|||||.||.|.|:|||.||...
Zfish   129 EMIITKAGRRMFPAMRVKIVG----LDPHQQYYIAMDIVPVDNKRYRYVYHSSKWMVAGNADSPV 189

  Fly   270 PARLYAHPDSPFSCEALRKQVISFEKVKLTNNEMDKNGQIVLNSMHRYQPRIHLVRLSHGQSI-P 333
            |.|:|.||||..|.:...:||:||:|:||||||:|..|.|:|:|||:||||:|::|......: |
Zfish   190 PPRVYIHPDSLASGDTWMRQVVSFDKLKLTNNELDDQGHIILHSMHKYQPRVHVIRKDFSSELSP 254

  Fly   334 SNPKELQDLDHKTYVFPETVFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRLTDFDRDPMEALLL 398
            :.|....: ..||:.|||||||.|||||||.||:||||.||||||||||.|    :|..:||   
Zfish   255 TKPVPTGE-GVKTFSFPETVFTTVTAYQNQQITRLKIDRNPFAKGFRDSGR----NRTGLEA--- 311

  Fly   399 EQQLRSPLRLFPDPLMQQFAAQGDPSSMALFEKARQHLQMFGGN---SPYAQLMMPQMYQAAAAA 460
                          :|:.:|....|.....||......:..||:   ||            ..::
Zfish   312 --------------IMETYAFWRPPVRTLTFEDFTNMQKQQGGSTGTSP------------TTSS 350

  Fly   461 AGPPPP------------PPGLGAFHMFQQQW------PQL----TAGFLASANQQAAAAQ---- 499
            .|.|.|            ||   .||:....:      .||    .:.:.|.|....||.|    
Zfish   351 TGTPSPSGATHLLSPSCSPP---TFHLAPNTFNVGCRESQLCNLGLSEYPACARSNMAALQGYGG 412

  Fly   500 --------------AAAQAQAQ----AQAAAAAMAANRTPPPPPTASTPSSTS-SGSPSPDMRPR 545
                          |.|.|||.    .|..::.:||........:.:|.:|.| ||....|....
Zfish   413 LADGSYGRLQTTGGAVASAQASESFLPQRTSSLIAAGMQGGAHGSLATGNSGSGSGGGKMDAYGS 477

  Fly   546 QYQRFSPYQLP-GGQGPPSSAAGSPPAVNASRSPAH 580
            |...|...||. ..|...|||:||..:..:|.|.||
Zfish   478 QLASFPASQLQYVMQAGASSASGSSASSGSSSSSAH 513

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
midNP_001260096.1 TBOX 185..384 CDD:238106 112/199 (56%)
tbx15NP_001315362.1 TBOX 110..305 CDD:238106 113/203 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574478
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.