DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mid and Tbx4

DIOPT Version :9

Sequence 1:NP_001260096.1 Gene:mid / 33770 FlyBaseID:FBgn0261963 Length:580 Species:Drosophila melanogaster
Sequence 2:NP_035666.2 Gene:Tbx4 / 21387 MGIID:102556 Length:552 Species:Mus musculus


Alignment Length:518 Identity:155/518 - (29%)
Similarity:224/518 - (43%) Gaps:139/518 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 QSPGTEDSEERL-----------------TPEPVQKAPKIVGSC-------NCD----------- 181
            |..|..:|||..                 .|||....|.:.|:.       ..|           
Mouse     3 QDKGLSESEEAFRAPGPALGEASNTSTTNAPEPALATPGLSGAALSSPPGQGADVAAAAAAAAEQ 67

  Fly   182 DLKPVQCHLETKELWDRFHDLGTEMIITKTGRRMFPTVRVSFSGPLRQIQPADRYAVLMDIIPMD 246
            .::.::..|..||||.:||:.||||||||.||||||:.:|..:|    :.|..:|.:|:||:|.|
Mouse    68 TIENIKVGLHEKELWKKFHEAGTEMIITKAGRRMFPSYKVKVTG----MNPKTKYILLIDIVPAD 128

  Fly   247 SKRYRYAYHRSAWLVAGKADPAPPARLYAHPDSPFSCEALRKQVISFEKVKLTNNEMDKNGQIVL 311
            ..||::..::  |:|||||:||.|.|||.|||||.:.....:|::||:|:|||||.:|..|.|:|
Mouse   129 DHRYKFCDNK--WMVAGKAEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIIL 191

  Fly   312 NSMHRYQPRIHLVRLSHGQSIPSNPKELQDLDHKTYVFPETVFTAVTAYQNQLITKLKIDSNPFA 376
            ||||:||||:|:|:.....:..|     ::....|:|||||.|.:||:|||..||:|||::||||
Mouse   192 NSMHKYQPRLHIVKADENNAFGS-----KNTAFCTHVFPETSFISVTSYQNHKITQLKIENNPFA 251

  Fly   377 KGFRDS-------SRLTDFDRDPMEALLLEQQLRSPLRLFPDPLMQQFAAQGDPSSMALFEKARQ 434
            ||||.|       :||...:...:...::.|:|.|          .|.:|:.|.|.:....:|.|
Mouse   252 KGFRGSDDSDLRVARLQSKEYPVISKSIMRQRLVS----------SQLSAKPDVSPLHSAHQALQ 306

  Fly   435 HLQMFGGNSPYAQLMMPQMYQAAAAAAGPP----------------------------------- 464
            |.|...|         ..|..|||.....|                                   
Mouse   307 HYQYENG---------AHMQFAAAEPQDLPLNTFPTQRDSSLFYHCLKRRDSARHLDLPCKRSYL 362

  Fly   465 PPPPGLGAFHMFQQQWPQLTAGFLASANQQAAAAQAAAQAQAQAQAAAAAMAANRTPPPPPTAST 529
            ..|..:|..|.|:.. |......|:.:.......:.|....:.....|...|.:..||||.:.:.
Mouse   363 ETPSSVGDDHYFRSP-PPYDQQMLSPSYCSEVTPREACMYSSSGPEIAGVSAVDDLPPPPLSCNM 426

  Fly   530 PSSTSSGSPSPDMRPRQYQRFS-------PYQ-----------LPGGQGPPSSAAGSPPAVNA 574
            .:|.|           .|..:|       |||           :|  :.|..:|..:.|..||
Mouse   427 WTSVS-----------PYTSYSVQTMETVPYQPFPAHFTATTVMP--RLPTIAAQSAQPPGNA 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
midNP_001260096.1 TBOX 185..384 CDD:238106 99/205 (48%)
Tbx4NP_035666.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..50 10/46 (22%)
TBOX 71..260 CDD:238106 99/199 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831485
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.