DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mid and Tbr1

DIOPT Version :9

Sequence 1:NP_001260096.1 Gene:mid / 33770 FlyBaseID:FBgn0261963 Length:580 Species:Drosophila melanogaster
Sequence 2:NP_033348.2 Gene:Tbr1 / 21375 MGIID:107404 Length:681 Species:Mus musculus


Alignment Length:574 Identity:178/574 - (31%)
Similarity:224/574 - (39%) Gaps:143/574 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 QHHQHHHNNNNNNNNNNVAHKSRNSGGAVAQTASAESQLNTSSTSSQGRCSTP-PQSPGTEDSEE 161
            ||...|...:..:.:..:||....:.||.      .|.|:.||.........| ||..|      
Mouse   129 QHGPAHPAFSIGSPSRYMAHHPVITNGAY------NSLLSNSSPQGYPTAGYPYPQQYG------ 181

  Fly   162 RLTPEPVQKAPKIVGSCNCDDLKP--VQCHLETKELWDRFHDLGTEMIITKTGRRMFPTVRVSFS 224
                ...|.||....|.....|.|  .|.:|..:.||.:||...|||||||.||||||.:..:.|
Mouse   182 ----HSYQGAPFYQFSSTQPGLVPGKAQVYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNIS 242

  Fly   225 GPLRQIQPADRYAVLMDIIPMDSKRYRYAYHRSAWLVAGKADP-APPARLYAHPDSPFSCEALRK 288
            |    :.|...|.:.:|:|..|...:|  :....|:..||||. ....|:|.|||||.:.....:
Mouse   243 G----LDPTAHYNIFVDVILADPNHWR--FQGGKWVPCGKADTNVQGNRVYMHPDSPNTGAHWMR 301

  Fly   289 QVISFEKVKLTNNE--MDKNGQ-IVLNSMHRYQPRIHLVRLSH-GQSIPSNPKELQDLDHKTYVF 349
            |.|||.|:|||||:  .:.||| :||.|:|:||||:|:|.::. |....|.|..:|     |:.|
Mouse   302 QEISFGKLKLTNNKGASNNNGQMVVLQSLHKYQPRLHVVEVNEDGTEDTSQPGRVQ-----TFTF 361

  Fly   350 PETVFTAVTAYQNQLITKLKIDSNPFAKGFRDS----------SRLTDFDRD------------P 392
            |||.|.|||||||..||:||||.|||||||||:          .|||....|            .
Mouse   362 PETQFIAVTAYQNTDITQLKIDHNPFAKGFRDNYDTIYTGCDMDRLTPSPNDSPRSQIVPGARYA 426

  Fly   393 MEALLLEQQLRS---PLRLFP---------------------DPLMQQFAAQGDPSSMALF-EKA 432
            |....|:.|..|   ..|..|                     .|  ||....|.||....| ..|
Mouse   427 MAGSFLQDQFVSNYAKARFHPGAGAGPGPGTDRSVPHTNGLLSP--QQAEDPGAPSPQRWFVTPA 489

  Fly   433 RQHLQM----------FGGNS----PYAQLMMPQMYQAAAAAAGPP----PPPPGLGAFHMFQQQ 479
            ...|..          |.||:    .||...:..:...||...|.|    ..|.|.||     :.
Mouse   490 NNRLDFAASAYDTATDFAGNAATLLSYAAAGVKALPLQAAGCTGRPLGYYADPSGWGA-----RS 549

  Fly   480 WPQLTAGFLASA-----NQQAAAAQAAAQAQAQAQAAAAAMAANRTPPPPPT------------- 526
            .||.......|.     |..||||:.|. |.......|..:||.|:|..|..             
Mouse   550 PPQYCGAKSGSVLPCWPNSAAAAARMAG-ANPYLGEEAEGLAAERSPLAPAAEDAKPKDLSDSSW 613

  Fly   527 ASTPSSTSS--GSPSPDMRPRQYQRFSPYQLPGGQGPPSSAAGSPPAVNASRSP 578
            ..||||..|  .|.|......:.:|.||...|               |:.|.||
Mouse   614 IETPSSIKSIDSSDSGIYEQAKRRRISPADTP---------------VSESSSP 652

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
midNP_001260096.1 TBOX 185..384 CDD:238106 95/215 (44%)
Tbr1NP_033348.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 43..83
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 108..127
TBOX 203..396 CDD:238106 94/203 (46%)
T-box_assoc 418..679 CDD:374412 59/258 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 447..483 7/37 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 597..655 16/71 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831493
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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