DRSC/TRiP Functional Genomics Resources

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Protein Alignment mid and tbx-39

DIOPT Version :9

Sequence 1:NP_001260096.1 Gene:mid / 33770 FlyBaseID:FBgn0261963 Length:580 Species:Drosophila melanogaster
Sequence 2:NP_502851.1 Gene:tbx-39 / 190678 WormBaseID:WBGene00006558 Length:396 Species:Caenorhabditis elegans


Alignment Length:375 Identity:79/375 - (21%)
Similarity:131/375 - (34%) Gaps:116/375 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 KELWDRFHDLGTEMIITKTGRRM-FPTVRVSFSGPLRQIQPADRYAVLMDIIPMDSKRYRYAYHR 256
            ::.|.:::. ..|||:...|.:: ||.:..:.:|    ::...||.||:.|...|:  .||.|..
 Worm    14 EDRWKQWYP-NMEMIVNNKGPKLIFPELNFNITG----LEEKSRYVVLLSIEKYDN--IRYGYRN 71

  Fly   257 SAW---LVAGKADPAPPARLYAHPDSPFSCEALRKQVISFEKVKLTNNE--MDKNGQIVLNSMHR 316
            ..|   .|..........:.:.|||.....:.|.|:.|.|:.|::||::  |||:....:.:||:
 Worm    72 GKWGPSKVRHATKKEQEIKYFLHPDGTKLGKELMKETIKFDTVRITNHKKFMDKDNVFFVETMHK 136

  Fly   317 YQPRIHLVRLSHGQSIPSNPKELQDLDHKTYVFPETV------------FTAVTAYQNQLITKLK 369
            |.|.:.:..:::.:|  :|.....::   ...||.||            |...:.|.|:|     
 Worm   137 YVPVLTVKNITNVES--ANHSMRMEV---AQFFPVTVYNQESIGNWKSKFHKNSTYGNRL----- 191

  Fly   370 IDSNPFAKGFRDSSRLTDFDRDPMEALL-----------------------LEQQLRSPLRLFPD 411
             |.....|. .|||......|...|..:                       |:.::.|.:..||.
 Worm   192 -DGGNKRKN-TDSSEERTSKRSKNETEIAVSDILQVASQSENYNESTNSGRLQNEISSSIHQFPS 254

  Fly   412 -----------------PL-MQQFAA-------QGDPSS-----------------MALFEKARQ 434
                             |: :|||.|       |.||.:                 .|:.:|...
 Worm   255 TSYQNQYPHAYPTVNTPPIYVQQFTALFDEIHNQFDPKTKQNRVAKNVQYLSSVPQFAINQKENI 319

  Fly   435 HLQMFGGNSP-YAQLMMPQMYQAAAAAAGPPPPPPGLGAFHMFQQQWPQL 483
            |     .|:| |.....|..|        |....|....:....||:|.|
 Worm   320 H-----QNAPDYPVSQFPNQY--------PYGSYPYYYPYFQSSQQFPHL 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
midNP_001260096.1 TBOX 185..384 CDD:238106 50/208 (24%)
tbx-39NP_502851.1 T-box 9..180 CDD:279278 42/177 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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