DRSC/TRiP Functional Genomics Resources

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Protein Alignment mid and tbx18

DIOPT Version :9

Sequence 1:NP_001260096.1 Gene:mid / 33770 FlyBaseID:FBgn0261963 Length:580 Species:Drosophila melanogaster
Sequence 2:XP_002933971.1 Gene:tbx18 / 100489044 XenbaseID:XB-GENE-489907 Length:578 Species:Xenopus tropicalis


Alignment Length:512 Identity:182/512 - (35%)
Similarity:244/512 - (47%) Gaps:101/512 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 KSRNSGGAVAQTASAESQLNTSSTSSQGRCSTPPQSPGTEDSEERLTPEPVQKAPKIVGSCNCDD 182
            :.|...|||.:.|        .|..:.|..|.....||        .||.......|:.|..|:|
 Frog    36 RKRAEDGAVERVA--------HSDGADGASSLHLPQPG--------PPELEHSVCSILASSPCED 84

  Fly   183 ------------------------LKPVQCHLETKELWDRFHDLGTEMIITKTGRRMFPTVRVSF 223
                                    ..||:..|:..|||.|||::||||||||.||||||.:||..
 Frog    85 TYGGVKSGNGPCRSPITPPAVPAQTAPVRVDLQGAELWKRFHEIGTEMIITKAGRRMFPAMRVKI 149

  Fly   224 SGPLRQIQPADRYAVLMDIIPMDSKRYRYAYHRSAWLVAGKADPAPPARLYAHPDSPFSCEALRK 288
            :|    :.|..:|.:.|||:|:|:|||||.||.|.|:|||.||...|.|:|.|||||.|.|...:
 Frog   150 TG----LDPHQQYYIAMDIVPVDNKRYRYVYHSSKWMVAGNADSPVPPRVYIHPDSPASGETWMR 210

  Fly   289 QVISFEKVKLTNNEMDKNGQIVLNSMHRYQPRIHLVRLSHGQSI-PSNPKELQDLDHKTYVFPET 352
            |||||:|:||||||:|..|.|:|:|||:||||:|::|...|:.: |..|..:.: ..|.:.||||
 Frog   211 QVISFDKLKLTNNELDDQGHIILHSMHKYQPRVHVIRKDCGEELSPVKPIPVGE-GEKAFSFPET 274

  Fly   353 VFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRLTDFDRDPMEALLLEQQL-RSPLRLFPDPLMQQ 416
            :||.|||||||.||:||||.||||||||||.|    :|..:|||:..... |..||......:..
 Frog   275 IFTTVTAYQNQQITRLKIDRNPFAKGFRDSGR----NRMGLEALVESYAFWRPSLRTLTFEDIPG 335

  Fly   417 FAAQGDPSSMALFEKARQHLQMFGGNSPYAQLMMPQMYQAAAAAAGPPPPPPGLGAFHM--FQQQ 479
            ...||...:.:|       |...|..:.:|.|:              |..|....|||:  ...|
 Frog   336 IPKQGSAGASSL-------LSGSGAANSHAHLL--------------PGSPCSSPAFHIGANTSQ 379

  Fly   480 WPQLTAGFLASANQQAAAAQAAAQAQAQ-----AQAAAAAMAANRTPP-PPPTASTPSSTSS--- 535
            ...||.|..::..:.:.|....:...|:     ..:.:.:.|..|||. ...|:||..:.|.   
 Frog   380 LCGLTPGDYSACGRSSLALNRYSTTLAETYNRLTNSTSESFATPRTPSYVGMTSSTAMNMSMAGN 444

  Fly   536 -----GSPSPDMRPRQYQRFSP---YQLPGGQGPPSSA-AGSPP---AVNASR--SP 578
                 |.|...: ..|....||   |.:|   .|.|:| :.|.|   :.||.|  ||
 Frog   445 DNETFGCPQTSL-SMQISGMSPQLQYIMP---SPTSNAFSSSQPHQSSYNAFRLHSP 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
midNP_001260096.1 TBOX 185..384 CDD:238106 115/199 (58%)
tbx18XP_002933971.1 TBOX 111..307 CDD:238106 116/204 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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