DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment H15 and sea-1

DIOPT Version :10

Sequence 1:NP_608926.2 Gene:H15 / 33769 FlyBaseID:FBgn0016660 Length:660 Species:Drosophila melanogaster
Sequence 2:NP_494611.1 Gene:sea-1 / 173710 WormBaseID:WBGene00004750 Length:376 Species:Caenorhabditis elegans


Alignment Length:179 Identity:40/179 - (22%)
Similarity:63/179 - (35%) Gaps:47/179 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 DVQYLDEAMLKELTERCIREGSDAPLIR-TLGAVFSSYRGLAASFQFCPAASSIEKMLARAPAGD 205
            |::|.|:..:.....|..|...:..||. .:..|||::..:..:.::.|........:.|.    
 Worm   142 DIKYADKQPIIPWGPRFSRSSKNDMLINLAISVVFSAWIAIKRNVEYKPLQFMSFVFVYRI---- 202

  Fly   206 LRNMKKEDLRSLEGDLDKDEDSKAPVESVPDVPDPAHTTVDVESLRSSM--KELYAARPAVFGPI 268
                 .|.|:|.|          ||       ..|.:.....||.|...  |.|..:...|||.|
 Worm   203 -----FEKLKSFE----------AP-------SSPIYNEEGEESGRGLRMGKRLLRSLSLVFGSI 245

  Fly   269 ----------NNALELLGKSLSRDLRVGLTSNDEL----ESLVTVFVIA 303
                      .|.:|.:|.|:.    :.|.:|.||    .|...::|||
 Worm   246 LLASLAYTGFLNGIEYMGYSIP----MVLYNNQELIVTASSAFMLYVIA 290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
H15NP_608926.2 T-box_TBX20-like 277..473 CDD:410319 9/31 (29%)
sea-1NP_494611.1 TBOX 167..369 CDD:214656 35/154 (23%)

Return to query results.
Submit another query.