DRSC/TRiP Functional Genomics Resources

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Protein Alignment nompC and Trpgamma

DIOPT Version :9

Sequence 1:NP_523483.2 Gene:nompC / 33768 FlyBaseID:FBgn0016920 Length:1761 Species:Drosophila melanogaster
Sequence 2:NP_001137830.2 Gene:Trpgamma / 34991 FlyBaseID:FBgn0032593 Length:1188 Species:Drosophila melanogaster


Alignment Length:992 Identity:215/992 - (21%)
Similarity:353/992 - (35%) Gaps:309/992 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   946 RELLTSVPATVKSETPTGQSLFGDLGTESGMTPLHLA---------------AFSGNENVVRLLL 995
            :.:|..:...:|:......|....||:||..:. |:|               .....||.:|   
  Fly    10 KSVLAPILNKIKNGADAADSAEKKLGSESSGSG-HIAVQIEPARRVKRHSIHGMMEEENTIR--- 70

  Fly   996 NSAGVQVDAATIENGYNPLHLACFGGHMSVVGLLLSRSAEL----LQSQDRNGRTGLHIAAMHGH 1056
              ...::...|:|.  ....||...|.|:....:|.::.:.    :...|..|||.|.:|..:.:
  Fly    71 --PHQEIRQLTLEE--KKFLLAVERGDMAGTRRMLQKAQDTEYINVNCVDPLGRTALLMAIDNEN 131

  Fly  1057 IQMVEILLG---------------------------QGAEINATDRNGW--------------TP 1080
            ::|||:|:.                           :....::...:.|              ||
  Fly   132 LEMVELLINYNVDTKDALLHSISEEFVEAVEVLLDHENVTFHSEGNHSWESASEDTSTFTPDITP 196

  Fly  1081 LHCAAKAGHLEVVKLLCEAGASPKSETNYGCAAIWFAASEGHNEVLRYLMNKEHDTYGLMEDKRF 1145
            |..||...:.|::|:|.:.||......:..|         |.:|.::   :::.|          
  Fly   197 LILAAHRDNYEIIKILLDRGAVLPMPHDVRC---------GCDECVQ---SRQED---------- 239

  Fly  1146 VYNLMVVSKNHNNKPIQEF-VLVSPA--------PVDTAAKLSNIYIVLSTKEKERAKDLVAAGK 1201
                   |..|:...|..: .|.||:        |:.||.:||.....||..|.|...:.....|
  Fly   240 -------SLRHSRSRINAYRALASPSLIALSSKDPILTAFELSWELRRLSFLEHEFKNEYQELRK 297

  Fly  1202 QCEAMATEL---------LALAAGSDSAGKILQATDKRNVEFLDVLIENEQKEVIAHTVVQRYLQ 1257
            ||:..||.|         |.:....|..|.:.:..::.::..|.:.|:..||:.:||:.||:.|.
  Fly   298 QCQDFATALLDHTRTSHELEILLNHDPTGPVYEHGERMHLNRLKLAIKLRQKKFVAHSNVQQLLA 362

  Fly  1258 ELWHGSLTWASWKILLLLVAFIVCPPVWIGFTFP-------------MGHKFNKVPIIKFM---- 1305
            .:|:..|.....|.:.|....|    :.||..||             :|....| |.|||:    
  Fly   363 SIWYEGLPGFRRKNMALQAVDI----IRIGIMFPIFSLAYILAPYSSIGQTMRK-PFIKFICHSA 422

  Fly  1306 SYLTSHIYLMI----------------HLSIVGITPIYPVLRLSLVPYWYEVGLLIWLSGLLLFE 1354
            ||.|....||:                ...::......|..| ...|.:.|..:|.|:|||:..|
  Fly   423 SYFTFLFLLMLASQRIETFIGGWFFADSSGMLNTMEELPTKR-GAKPTFIEWLILAWVSGLIWSE 486

  Fly  1355 LTNPSDKSGL--------GSIKVLVLLLGMAGVGVHVSAFLFVSKEY----------------W- 1394
            :....| .||        ..|..:...|.:|.|.:.|.:|..|.||.                | 
  Fly   487 VKQLWD-VGLQEYLNDMWNVIDFVTNSLYVATVALRVVSFFQVQKEMIYNSHATDLPRERWDAWD 550

  Fly  1395 PTLVYCRNQCFALAFLLACVQILDFLSFHHLFGPWAIIIGDLLKDLAR--FLAVLAIFVFGFSMH 1457
            |.|:  ....|:.|.:.:.::::...|.:...||..:.:..::.|:.:  ||.||.:|.||    
  Fly   551 PMLI--SEGLFSAANIFSSLKLVYIFSVNPHLGPLQVSLSRMVMDIMKFFFLYVLVLFAFG---- 609

  Fly  1458 IVALNQSFANFSPEDLRSFEKKNRNRGYFSDDDMPTPRPPPVENYVD-------------SRFSE 1509
             ..|||....::  ||   |||.            .|...|:...::             .||| 
  Fly   610 -SGLNQLLWYYA--DL---EKKR------------CPEVSPMSALLNMNGTNDPNACIVWRRFS- 655

  Fly  1510 FRRKHKDDLRMHPINSFE---LLFFAVFGQTTTEQTQVDKIKNVATPTQPYWVEYLFKIVFGIYM 1571
                          |.||   .||:||||....:..::|.||        .:..:...::||.|.
  Fly   656 --------------NLFETTQTLFWAVFGLIDLDSFELDGIK--------IFTRFWGMLMFGTYS 698

  Fly  1572 LVSVVVLINLLIAMMSDTYQRIQAQSDIEWKFGLSKL-IRNMHRTTTAPSPLNLVTT----WFMW 1631
            ::::|||:|||||||:.:||.|..::|:||||..||| |.......|.|.|.|::.|    |:  
  Fly   699 VINIVVLLNLLIAMMNHSYQLISERADVEWKFARSKLWISYFEEGGTCPPPFNIIPTPKSIWY-- 761

  Fly  1632 IVEKVKARMKKKKRPSLVQMMGIRQASPRTKAGAKWLSKI-KKDSVALSQVHLSPL---GSQAS- 1691
                                            ..||:.:: ...|.|..:.||..:   ..||| 
  Fly   762 --------------------------------AIKWMRRVFCSGSSAARREHLKTIRRKAQQASD 794

  Fly  1692 ----FSQANQNRIENVADWEAIAKKYRALVGDEEGGSLKDSDA----------ESG------SQE 1736
                :.|..:|.:......|....:.:.:..|:.....:|..|          .||      :.:
  Fly   795 RDFKYQQIMRNLVRRYVTVEQRKAESQGVTEDDVNEIKQDISAFRCELVEILKNSGMDTNVTAGQ 859

  Fly  1737 GSGGQQPPAQVGRRAIK 1753
            |.||.:...|..||.:|
  Fly   860 GGGGGKKNRQKERRLMK 876

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nompCNP_523483.2 ANK repeat 129..157 CDD:293786
Ank_2 131..228 CDD:289560
ANK 155..319 CDD:238125
ANK repeat 159..186 CDD:293786
ANK repeat 232..265 CDD:293786
Ank_2 237..331 CDD:289560
ANK 263..387 CDD:238125
ANK repeat 267..298 CDD:293786
ANK repeat 300..331 CDD:293786
Ank_2 305..398 CDD:289560
ANK 329..454 CDD:238125
ANK repeat 367..398 CDD:293786
ANK repeat 400..431 CDD:293786
Ank_2 405..498 CDD:289560
ANK 428..555 CDD:238125
ANK repeat 433..463 CDD:293786
ANK repeat 469..499 CDD:293786
ANK 496..641 CDD:238125
ANK repeat 501..532 CDD:293786
Ank_2 507..616 CDD:289560
ANK repeat 534..575 CDD:293786
ANK repeat 577..616 CDD:293786
Ank_2 625..722 CDD:289560
ANK 654..780 CDD:238125
ANK repeat 660..690 CDD:293786
ANK repeat 692..723 CDD:293786
Ank_2 697..790 CDD:289560
ANK 720..847 CDD:238125
ANK repeat 725..757 CDD:293786
ANK repeat 759..790 CDD:293786
Ank_5 779..834 CDD:290568
ANK 787..915 CDD:238125
ANK repeat 792..824 CDD:293786
ANK repeat 861..893 CDD:293786
Ank_4 865..915 CDD:290365
Ank_4 929..995 CDD:290365 12/63 (19%)
ANK repeat 932..972 CDD:293786 4/25 (16%)
ANK 969..1096 CDD:238125 34/186 (18%)
ANK repeat 974..1007 CDD:293786 6/47 (13%)
Ank_2 979..1074 CDD:289560 22/140 (16%)
ANK repeat 1009..1041 CDD:293786 5/35 (14%)
ANK 1039..1159 CDD:238125 27/160 (17%)
ANK repeat 1043..1074 CDD:293786 9/57 (16%)
Ank_2 1048..1135 CDD:289560 20/127 (16%)
ANK repeat 1076..1101 CDD:293786 9/38 (24%)
ANK repeat 1109..1134 CDD:293786 3/24 (13%)
Ion_trans <1393..1598 CDD:278921 57/239 (24%)
TrpgammaNP_001137830.2 trp 77..841 CDD:273311 194/882 (22%)
ANK 113..>217 CDD:238125 19/103 (18%)
ANK repeat 118..147 CDD:293786 9/28 (32%)
ANK repeat 175..217 CDD:293786 9/41 (22%)
TRP_2 227..286 CDD:285535 17/87 (20%)
RRT14 <778..892 CDD:293680 20/99 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3609
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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