DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nompC and Trpc5

DIOPT Version :9

Sequence 1:NP_523483.2 Gene:nompC / 33768 FlyBaseID:FBgn0016920 Length:1761 Species:Drosophila melanogaster
Sequence 2:NP_543174.1 Gene:Trpc5 / 140933 RGDID:619787 Length:974 Species:Rattus norvegicus


Alignment Length:836 Identity:187/836 - (22%)
Similarity:309/836 - (36%) Gaps:243/836 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   863 DATPLQLAAEGGHADVVKALVRAGASCTEENKAGFTAVHLAAQNGHGQVLDVLKSTNSLRINSKK 927
            |..|||             :|||....:.|.||..:||.      .|....|.::.....|    
  Rat    16 DRIPLQ-------------IVRAETELSAEEKAFLSAVE------KGDYATVKQALQEAEI---- 57

  Fly   928 LGLTPLHVAAYYGQADTVRELLTSVPATVKSETPTGQSLFGDLGTESGMTPLHLAAFSGNENVVR 992
                      ||.             ..:....|.|:|            .|.:|..:.|..::.
  Rat    58 ----------YYN-------------VNINCMDPLGRS------------ALLIAIENENLEIME 87

  Fly   993 LLLNSAGVQVDAATIENGYNPLHLACFGGHMSVVGLLLSRSAELLQSQDRNGRTGLHIAAMHGHI 1057
            ||||.: |.|..|.:           :.....|||     :.|||.|..:..          |..
  Rat    88 LLLNHS-VYVGDALL-----------YAIRKEVVG-----AVELLLSYRKPS----------GEK 125

  Fly  1058 QMVEILLG-QGAEINATDRNGWTPLHCAAKAGHLEVVKLLCEAGASPKSETNYGCAAIWFAASEG 1121
            |:..:::. |.:|...    ..||:..||...:.|::|||.:...:........|..:...:|  
  Rat   126 QVPTLMMDTQFSEFTP----DITPIMLAAHTNNYEIIKLLVQKRVTIPRPHQIRCNCVECVSS-- 184

  Fly  1122 HNEVLRYLMNKEHDTYGLMEDKRFVYNLMVVSKNHNNKPIQEFVLVSPAPVDTAAKLSNIYIVLS 1186
                      .|.|:......:..:|..:.       .| ....|.|..|:.||.:|......||
  Rat   185 ----------SEVDSLRHSRSRLNIYKALA-------SP-SLIALSSEDPILTAFRLGWELKELS 231

  Fly  1187 TKEKERAKDLVAAGKQCEAMATELLALAAGSDSAGKILQATDKRNVEF----------LDVLIEN 1241
            ..|.|...:.....:||:..|.:||..|..|.....||...|..:.|.          |.|.|:.
  Rat   232 KVENEFKAEYEELSQQCKLFAKDLLDQARSSRELEIILNHRDDHSEELDPQKYHDLAKLKVAIKY 296

  Fly  1242 EQKEVIAHTVVQRYLQELWHGSLTWASWKILLLLVAFIVCPPVWIGFTFPM-------------G 1293
            .|||.:|....|:.|..||:..  :..|:....:|..:.|  :.|||.|||             |
  Rat   297 HQKEFVAQPNCQQLLATLWYDG--FPGWRRKHWVVKLLTC--MTIGFLFPMLSIAYLISPRSNLG 357

  Fly  1294 HKFNKVPIIKFM----SYLTSHIYLMI--------HLSIVGITPIYPVLRLSLVPY-----WYEV 1341
             .|.|.|.|||:    ||||....|::        .|.:.|..|  .|:...::|:     |.|:
  Rat   358 -LFIKKPFIKFICHTASYLTFLFMLLLASQHIVRTDLHVQGPPP--TVVEWMILPWVLGFIWGEI 419

  Fly  1342 GLLIWLSG----------LLLFELTNPSDKSGLGSIKVLVLLLGMAGVGVHVSAFLFVS----KE 1392
            ..: |..|          |:.|.:.:                |.:|.:.:.:.|::..:    :|
  Rat   420 KEM-WDGGFTEYIHDWWNLMDFAMNS----------------LYLATISLKIVAYVKYNGSRPRE 467

  Fly  1393 YW----PTLVYCRNQCFALAFLLACVQILDFLSFHHLFGPWAIIIGDLLKDLARFLAVLAIFVFG 1453
            .|    |||:  ....||::.:|:.::::...:.:...||..|.:|.:|.|:.:||.:..:.:..
  Rat   468 EWEMWHPTLI--AEALFAISNILSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLA 530

  Fly  1454 FSMHIVALNQSFANFSPEDLRSFEKKNRNRGYFSDDDMPTPRPPPVENYVDSRFSEFRRKHKDDL 1518
            |:.   .|||.:..:   :.|:.::.|..:|...:..             ::.||..        
  Rat   531 FAN---GLNQLYFYY---ETRAIDEPNNCKGIRCEKQ-------------NNAFSTL-------- 568

  Fly  1519 RMHPINSFELLFFAVFGQTTTEQTQVDKIKNVATPTQPYWVEYLFKIVFGIYMLVSVVVLINLLI 1583
                ..:.:.||::|||......|.| |.::..|       |::...:||.|.::|:|||:|:||
  Rat   569 ----FETLQSLFWSVFGLLNLYVTNV-KARHEFT-------EFVGATMFGTYNVISLVVLLNMLI 621

  Fly  1584 AMMSDTYQRIQAQSDIEWKFGLSKL-IRNMHRTTTAPSPLNLVTT---------WF 1629
            |||:::||.|...:||||||..:|| :.......|.|.|.|::.:         ||
  Rat   622 AMMNNSYQLIADHADIEWKFARTKLWMSYFDEGGTLPPPFNIIPSPKSFLYLGNWF 677

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nompCNP_523483.2 ANK repeat 129..157 CDD:293786
Ank_2 131..228 CDD:289560
ANK 155..319 CDD:238125
ANK repeat 159..186 CDD:293786
ANK repeat 232..265 CDD:293786
Ank_2 237..331 CDD:289560
ANK 263..387 CDD:238125
ANK repeat 267..298 CDD:293786
ANK repeat 300..331 CDD:293786
Ank_2 305..398 CDD:289560
ANK 329..454 CDD:238125
ANK repeat 367..398 CDD:293786
ANK repeat 400..431 CDD:293786
Ank_2 405..498 CDD:289560
ANK 428..555 CDD:238125
ANK repeat 433..463 CDD:293786
ANK repeat 469..499 CDD:293786
ANK 496..641 CDD:238125
ANK repeat 501..532 CDD:293786
Ank_2 507..616 CDD:289560
ANK repeat 534..575 CDD:293786
ANK repeat 577..616 CDD:293786
Ank_2 625..722 CDD:289560
ANK 654..780 CDD:238125
ANK repeat 660..690 CDD:293786
ANK repeat 692..723 CDD:293786
Ank_2 697..790 CDD:289560
ANK 720..847 CDD:238125
ANK repeat 725..757 CDD:293786
ANK repeat 759..790 CDD:293786
Ank_5 779..834 CDD:290568
ANK 787..915 CDD:238125 13/51 (25%)
ANK repeat 792..824 CDD:293786
ANK repeat 861..893 CDD:293786 7/29 (24%)
Ank_4 865..915 CDD:290365 12/49 (24%)
Ank_4 929..995 CDD:290365 9/65 (14%)
ANK repeat 932..972 CDD:293786 5/39 (13%)
ANK 969..1096 CDD:238125 27/127 (21%)
ANK repeat 974..1007 CDD:293786 10/32 (31%)
Ank_2 979..1074 CDD:289560 21/95 (22%)
ANK repeat 1009..1041 CDD:293786 7/31 (23%)
ANK 1039..1159 CDD:238125 18/120 (15%)
ANK repeat 1043..1074 CDD:293786 4/31 (13%)
Ank_2 1048..1135 CDD:289560 15/87 (17%)
ANK repeat 1076..1101 CDD:293786 8/24 (33%)
ANK repeat 1109..1134 CDD:293786 2/24 (8%)
Ion_trans <1393..1598 CDD:278921 50/208 (24%)
Trpc5NP_543174.1 trp 17..756 CDD:273311 186/835 (22%)
ANK repeat 69..98 CDD:293786 11/41 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3609
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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