DRSC/TRiP Functional Genomics Resources

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Protein Alignment nompC and trpc4

DIOPT Version :9

Sequence 1:NP_523483.2 Gene:nompC / 33768 FlyBaseID:FBgn0016920 Length:1761 Species:Drosophila melanogaster
Sequence 2:XP_002939629.3 Gene:trpc4 / 100485338 XenbaseID:XB-GENE-1013618 Length:969 Species:Xenopus tropicalis


Alignment Length:819 Identity:177/819 - (21%)
Similarity:316/819 - (38%) Gaps:218/819 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   935 VAAYYGQADTVRELLTSVPATVKSETPTGQSLFGDLGTESGMTPLHLAAFS----GNENVVRLLL 995
            :|.:|.:.:|.......:|..:             :.:||.::|...|..|    |:...|:..|
 Frog     1 MAQFYYKRNTNSPYQDRIPLRI-------------VRSESELSPSEKAYLSAVEKGDYASVKQAL 52

  Fly   996 NSAGVQVDAATIENGYNPLHLACFGGHMSVVGLLLSRSAELLQSQDRNGRTGLHIAAMHGHIQMV 1060
            ..|.:          |..:::.|.                     |..|||.|.||..:.:::::
 Frog    53 EEAEI----------YFKININCI---------------------DPLGRTALLIAIENENLELI 86

  Fly  1061 EILLGQGAEINATDRNGWTPLHCAAK---------------AGHLEVVKLLCEAGASPKSETNYG 1110
            |:||.....:      |...||...|               :|..:|..:|.:   ...||....
 Frog    87 ELLLSYNVYV------GDALLHAIRKEVVGAVELLLNHKKPSGEKQVPPILLD---KQFSEFTPD 142

  Fly  1111 CAAIWFAASEGHNEVLRYLMNKEHDTYGLMEDK---------RFVYNLMVVSKNHNNKPIQEF-V 1165
            ...|..||...:.|::::|:.|     |:...:         ..|....|.|..|:...:..: .
 Frog   143 ITPIILAAHTNNYEIIKHLVQK-----GVSVPRPHEVRCNCVECVSGSDVDSLRHSRSRLNIYRA 202

  Fly  1166 LVSPA--------PVDTAAKLSNIYIVLSTKEKERAKDLVAAGKQCEAMATELLALAAGS----- 1217
            |.||:        |..||.:||.....||..|.|...:......||:..|.:||.....|     
 Frog   203 LSSPSLIALSSEDPFLTAFQLSWELQELSKVENEFKSEYEELSSQCKQFAKDLLDQTRSSRELEI 267

  Fly  1218 -----DSAGKILQATDKRNVEFLDVLIENEQKEVIAHTVVQRYLQELWHGSLTWASWKILLLLVA 1277
                 |..| :|..::..::..|.:.|:..|||.:|....|:.|...|:..  :..|:....:|.
 Frog   268 ILNYRDDGG-LLDDSNGNDLARLKLAIKYRQKEFVAQPNCQQLLASRWYDE--FPGWRRRHWVVK 329

  Fly  1278 FIVCPPVWIGFTFP-------MGHK-----FNKVPIIKFM----SYLTSHIYLMIHLSIVGIT-- 1324
            .:.|  |.:|..||       :..|     |.:.|.|||:    ||||....|::....:..|  
 Frog   330 MVTC--VIVGLLFPAFSCCYLIAPKSTFGLFIRKPFIKFICHTASYLTFLFLLLLASQNINKTES 392

  Fly  1325 ---PIYPVLRLSLVPY-----WYEVGLLIWLSGL--LLFELTNPSDKSGLGSIKVLVLLLGMAGV 1379
               |...::...::|:     |.|:..: |..|.  .:.:..|..|        .::..|.:|.:
 Frog   393 LQGPAPTIVEWMILPWVLGFIWGEIKQM-WDGGFQDYIHDWWNLMD--------FVMNSLYLATI 448

  Fly  1380 GVHVSAFLFV----SKEYW----PTLVYCRNQCFALAFLLACVQILDFLSFHHLFGPWAIIIGDL 1436
            .:.:.|::..    ::..|    ||||  ....||:|.:.:.::::...:.:...||..|.:|.:
 Frog   449 SLKIVAYVKFHGQRNRAEWEMFHPTLV--AEAVFAIANIFSSLRLISLFTANSHLGPLQISLGRM 511

  Fly  1437 LKDLARFLAVLAIFVFGFSMHIVALNQSFANFSPEDLRS------FEKKNRNRGYFSDDDMPTPR 1495
            |.|:.:||.:..:.:..|:.   .|||.:..:..:...|      .||:|               
 Frog   512 LLDILKFLFIYCLVLLAFAN---GLNQLYFYYEADAKSSGCKGIRCEKQN--------------- 558

  Fly  1496 PPPVENYVDSRFSEFRRKHKDDLRMHPINSFELLFFAVFGQTTTEQTQVDKIKNVATPTQPYWVE 1560
                     :.||..            ..:.:.||:::||......|.||       |...: .|
 Frog   559 ---------NAFSTL------------FETLQSLFWSIFGLINLYVTNVD-------PKHEF-TE 594

  Fly  1561 YLFKIVFGIYMLVSVVVLINLLIAMMSDTYQRIQAQSDIEWKFGLSKL-IRNMHRTTTAPSPLNL 1624
            ::...:||.|.::|:|||:|:|||||:::||.|...:||||||..:|| :.......|.|:|.|:
 Frog   595 FVGATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFEEGGTLPTPFNI 659

  Fly  1625 V----TTWFM--WIVEKVKARMKKKKRPSLVQMMGIRQA 1657
            :    :.|::  ||.::: .:.|.|::|.....:|.|.|
 Frog   660 IPSPKSLWYLIKWIRKQI-CKKKMKRKPESFGAIGRRAA 697

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nompCNP_523483.2 ANK repeat 129..157 CDD:293786
Ank_2 131..228 CDD:289560
ANK 155..319 CDD:238125
ANK repeat 159..186 CDD:293786
ANK repeat 232..265 CDD:293786
Ank_2 237..331 CDD:289560
ANK 263..387 CDD:238125
ANK repeat 267..298 CDD:293786
ANK repeat 300..331 CDD:293786
Ank_2 305..398 CDD:289560
ANK 329..454 CDD:238125
ANK repeat 367..398 CDD:293786
ANK repeat 400..431 CDD:293786
Ank_2 405..498 CDD:289560
ANK 428..555 CDD:238125
ANK repeat 433..463 CDD:293786
ANK repeat 469..499 CDD:293786
ANK 496..641 CDD:238125
ANK repeat 501..532 CDD:293786
Ank_2 507..616 CDD:289560
ANK repeat 534..575 CDD:293786
ANK repeat 577..616 CDD:293786
Ank_2 625..722 CDD:289560
ANK 654..780 CDD:238125
ANK repeat 660..690 CDD:293786
ANK repeat 692..723 CDD:293786
Ank_2 697..790 CDD:289560
ANK 720..847 CDD:238125
ANK repeat 725..757 CDD:293786
ANK repeat 759..790 CDD:293786
Ank_5 779..834 CDD:290568
ANK 787..915 CDD:238125
ANK repeat 792..824 CDD:293786
ANK repeat 861..893 CDD:293786
Ank_4 865..915 CDD:290365
Ank_4 929..995 CDD:290365 11/63 (17%)
ANK repeat 932..972 CDD:293786 4/36 (11%)
ANK 969..1096 CDD:238125 27/145 (19%)
ANK repeat 974..1007 CDD:293786 8/36 (22%)
Ank_2 979..1074 CDD:289560 18/98 (18%)
ANK repeat 1009..1041 CDD:293786 2/31 (6%)
ANK 1039..1159 CDD:238125 30/143 (21%)
ANK repeat 1043..1074 CDD:293786 9/30 (30%)
Ank_2 1048..1135 CDD:289560 21/101 (21%)
ANK repeat 1076..1101 CDD:293786 7/39 (18%)
ANK repeat 1109..1134 CDD:293786 6/24 (25%)
Ion_trans <1393..1598 CDD:278921 51/214 (24%)
trpc4XP_002939629.3 trp 17..749 CDD:273311 174/803 (22%)
ANK repeat 69..133 CDD:293786 16/69 (23%)
ANK repeat 135..166 CDD:293786 8/35 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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