DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12512 and LACS4

DIOPT Version :9

Sequence 1:NP_608924.1 Gene:CG12512 / 33766 FlyBaseID:FBgn0031703 Length:593 Species:Drosophila melanogaster
Sequence 2:NP_194116.1 Gene:LACS4 / 828484 AraportID:AT4G23850 Length:666 Species:Arabidopsis thaliana


Alignment Length:681 Identity:143/681 - (20%)
Similarity:250/681 - (36%) Gaps:201/681 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 VYRTIGQQLELSASNFGD-VEAIVSCH----------------------EGK--RYSFKSLLQEA 84
            |||:|     .:...|.| :|.:.||.                      :||  :|.:::..:..
plant    27 VYRSI-----FAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVY 86

  Fly    85 D---ALAAGFRKLGLQPGDAVGLWAPNYLHWYLGMMGAARAGLTSVGLNPAYQGPEIAYCLNKVN 146
            |   .|....|.:|::.....|::..|...|.:.|......||..|.|........:.:.::...
plant    87 DIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGADAVEFIISHSE 151

  Fly   147 VKAIIA-----PETFKTQNYYEILRDICPEISDADTGKIRSEKFPHLRSVIIDSNDSLKGALR-- 204
            |..:..     .|.|||          ||..::            ::::|:     |..|..|  
plant   152 VSIVFVEEKKISELFKT----------CPNSTE------------YMKTVV-----SFGGVSREQ 189

  Fly   205 -------------FDDFLDLASKSEREEVAKMQKSILPESACNIQFTSGTTGNPKAACLTHHNFV 256
                         :|:||.|....:.:...|.:..|     |.|.:||||||:||...:::.:.|
plant   190 KEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDI-----CTIMYTSGTTGDPKGVMISNESIV 249

  Fly   257 NNGIHVGNRNELEGERICVQ------VPMFHAFGVIISIMAALTKGATMVLPAAGFSPKDSLQAI 315
            .....|....:...|.:.|:      :|:.|.|..:|. ...:..||     |.||...| ::.:
plant   250 TLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIE-ECFIQHGA-----AIGFWRGD-VKLL 307

  Fly   316 VNEKCSVIHGTPTMY------VDLV--NTQKKL-------------------------------- 340
            :.:...:   .||::      :|.|  ..||||                                
plant   308 IEDLAEL---KPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQSHVEAS 369

  Fly   341 ----QVPLGRIKKAVTGGAIV----SPQLIKDVRQVLNVEAVHSV---YGLTETTAVIFQSLPGD 394
                ::...::|:.:.|...:    :..|...|...|.|.|...|   |||||:.|..|.|||.:
plant   370 PLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPDE 434

  Fly   395 SSDVVLNSVGHLTDHIEAK---VVDAEGRCVPFGQPGELCVRGYTTMLGYHDDEEKTKETIGNDR 456
            ..  :|.:||....:::.:   |.:.|...:.....||:|:||.|...||:..|:.|||.: .|.
plant   435 LG--MLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYKREDLTKEVL-IDG 496

  Fly   457 WLRTGDQFVLEANGYGRIVGRLKEML-IRGGENIFPKEIE---------DFLNAHPQVIEAHVIG 511
            ||.|||....:.:|..:|:.|.|.:. :..||.:..:.||         |.:..:....|:.:|.
plant   497 WLHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESFLIA 561

  Fly   512 V--PDERLGEEVCAYVRLEEGVDPASFTA-------------ETLKAYAKGKLAHFKVPRYV--- 558
            :  |::.:.|...|    |.||. ..:.|             |.:|...:.|:..|::.:.:   
plant   562 IANPNQHILERWAA----ENGVS-GDYDALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLD 621

  Fly   559 -IPIDAFPKTTSGKIQKFKLVEAFKAKETEL 588
             :|.|         :::..|...||.|..:|
plant   622 PVPFD---------MERDLLTPTFKKKRPQL 643

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12512NP_608924.1 PRK08315 43..592 CDD:236236 143/681 (21%)
FACL_like_2 229..577 CDD:213284 97/436 (22%)
LACS4NP_194116.1 PLN02614 1..666 CDD:166255 143/681 (21%)
LC-FACS_euk 75..655 CDD:213293 132/628 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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