DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12512 and LACS1

DIOPT Version :9

Sequence 1:NP_608924.1 Gene:CG12512 / 33766 FlyBaseID:FBgn0031703 Length:593 Species:Drosophila melanogaster
Sequence 2:NP_001031554.1 Gene:LACS1 / 819337 AraportID:AT2G47240 Length:660 Species:Arabidopsis thaliana


Alignment Length:590 Identity:135/590 - (22%)
Similarity:219/590 - (37%) Gaps:147/590 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 SFKSLLQEADALAAGFRKLGLQPGDAVGLWAPNYLHWYLGMMGAARAGLTSVGLNPAYQGPEIAY 140
            ::|.:.:|...:.:..|..|.:||..||::..|...|.:.|...|...|..|.|........:.|
plant    78 TYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEACAAHTLICVPLYDTLGSGAVDY 142

  Fly   141 CLNKVNVKAIIAPETFKTQNYYEILRDICPEISDADTGKIRSEKFPHLRSVIIDSN--DSLK--- 200
            .:....:..:...:| |.:...|      |:...|          ..|::::..:|  |.|.   
plant   143 IVEHAEIDFVFVQDT-KIKGLLE------PDCKCA----------KRLKAIVSFTNVSDELSHKA 190

  Fly   201 ---GALRFD--DFLDLASKSEREEVAKMQKSILPESACNIQFTSGTTGNPKAACLTH-------- 252
               |...:.  |||.:.  .|:.|.....|:.   :.|.|.:||||:|:||...|||        
plant   191 SEIGVKTYSWIDFLHMG--REKPEDTNPPKAF---NICTIMYTSGTSGDPKGVVLTHQAVATFVV 250

  Fly   253 --------------HN--------------------FVNNGIHV----GNRNELEGERICVQ--- 276
                          |:                    |...|..|    ||.|.|..:   :|   
plant   251 GMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGNLNVLRDD---IQELK 312

  Fly   277 ------VPMFHAFGVIISIMAALTKGATMVLPAAGFSPKDSLQAIVNEKCSVI-----HGTPTMY 330
                  ||.     |...|...:.|....:.|...|    ...|:...|.:.:     |...:..
plant   313 PTYLAGVPR-----VFERIHEGIQKALQELNPRRRF----IFNALYKHKLAWLNRGYSHSKASPM 368

  Fly   331 VDLVNTQKKLQVPLGRIKKAVTGGAIVSPQLIKDVRQVLNVEAVHSVYGLTETTAVIFQSLPGDS 395
            .|.:..:|......|||:..|:|||.:||::.:.:|.......|.. ||||||........|.:.
plant   369 ADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQG-YGLTETLGGTALGFPDEM 432

  Fly   396 SDVVLNSVGHLTDHIEAKVVD-AEGRCVPFGQ--PGELCVRGYTTMLGYHDDEEKTKETIGNDRW 457
              .:|.:||....:.|.::.: :|....|.|:  .||:|:||.....||:.:.|.|:|.: .|.|
plant   433 --CMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYYKNPELTEEVM-KDGW 494

  Fly   458 LRTGDQFVLEANGYGRIVGRLKEML-IRGGENIFPKEIEDFLNAHPQVIEAHVIG---------- 511
            ..|||...:..||..:|:.|.|.:: :..||.:..:.:|:....:..|.:..|.|          
plant   495 FHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEHLENIFGQNSVVQDIWVYGDSFKSMLVAV 559

  Fly   512 -VPD--------ERLG-----EEVCAYVRLEEG-VDPASFTAETLKAYAKGKLAHFKVPRYVI-- 559
             ||:        :.||     ||:|::..|:|. :.....|||      |.||..|:..:.|.  
plant   560 VVPNPETVNRWAKDLGFTKPFEELCSFPELKEHIISELKSTAE------KNKLRKFEYIKAVTVE 618

  Fly   560 --PID 562
              |.|
plant   619 TKPFD 623

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12512NP_608924.1 PRK08315 43..592 CDD:236236 135/590 (23%)
FACL_like_2 229..577 CDD:213284 103/427 (24%)
LACS1NP_001031554.1 PLN02430 1..660 CDD:178049 135/590 (23%)
LC-FACS_euk 72..652 CDD:213293 135/590 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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