DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12512 and hll

DIOPT Version :9

Sequence 1:NP_608924.1 Gene:CG12512 / 33766 FlyBaseID:FBgn0031703 Length:593 Species:Drosophila melanogaster
Sequence 2:NP_609696.1 Gene:hll / 34822 FlyBaseID:FBgn0286723 Length:681 Species:Drosophila melanogaster


Alignment Length:671 Identity:154/671 - (22%)
Similarity:253/671 - (37%) Gaps:199/671 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 RTIGQQLELSASNFGDVEAIV-----SCHEG-KRYSFKSLLQEADALAAGFRKLGLQPGDAVGLW 105
            :||.:..:.|...:.|:.|:|     |.::| ...:|....:..:..|.....:|::...:||:.
  Fly    36 QTIPEFFKESCEKYSDLPALVWETPGSGNDGWTTLTFGEYQERVEQAALMLLSVGVEERSSVGIL 100

  Fly   106 APNYLHWYLGMMGAARAGLTSVGLNPAYQGPEIAYCLNKVNVKAIIAPETFKTQNYYEILRDICP 170
            |.|...|:....||.|||....|:.|:.....:.:.|           .|.::        .:| 
  Fly   101 AFNCPEWFFAEFGALRAGAVVAGVYPSNSAEAVHHVL-----------ATGES--------SVC- 145

  Fly   171 EISDA-DTGKIRS--EKFPHLRSVIIDSNDSLKGALRFDDFLD--------------LASKSERE 218
            .:.|| ...|:|:  |:.|.|::||     .|.|.  |:.|:|              ..|...:|
  Fly   146 VVDDAQQMAKLRAIKERLPRLKAVI-----QLHGP--FEAFVDHEPGYFSWQKLQEQTFSSELKE 203

  Fly   219 EVAKMQKSILPESACNIQFTSGTTGNPKAACLTHHNFV---------NNGIHVGNRNELEGERIC 274
            |:...:..|.......:.|||||.|.|||..|:|.|.|         ...|.||.      |...
  Fly   204 ELLARESRIRANECAMLIFTSGTVGMPKAVMLSHDNLVFDTKSAAAHMQDIQVGK------ESFV 262

  Fly   275 VQVPMFHAFGVIISIMAALTKGATMVLPAAGFSPKDSLQAIV-----NEKCSVIHGTPTMYVDLV 334
            ..:|:.|....|..:...|:....:.     |:.||:|:..:     ..:.:.:.|.|.::..| 
  Fly   263 SYLPLSHVAAQIFDVFLGLSHAGCVT-----FADKDALKGTLIKTFRKARPTKMFGVPRVFEKL- 321

  Fly   335 NTQKKLQV------PLGRIKKAVTGGAIVSPQ----------------------LIKDVRQVLNV 371
              |::|..      |..|:..|....|:...|                      ::|.:|:::.|
  Fly   322 --QERLVAAEAKARPYSRLLLARARAAVAEHQTTLMAGKSPSIYGNAKYWLACRVVKPIREMIGV 384

  Fly   372 E-------------------------AVHSVYGLTETTAVIFQSLPGDSSDVVLNSVGHLTDHIE 411
            :                         |:...||::||:..|  :|..|.|:  |.|.|...:.:.
  Fly   385 DNCRVFFTGGAPTSEELKQFFLGLDIALGECYGMSETSGAI--TLNVDISN--LYSAGQACEGVT 445

  Fly   412 AKV--VDAEGRCVPFGQPGELCVRGYTTMLGYHDDEEKTKETIGNDRWLRTGDQFVLEANGYGRI 474
            .|:  .|..|:       ||:.:||....:||....:||:||:..|.||.:||...::..|...|
  Fly   446 LKIHEPDCNGQ-------GEILMRGRLVFMGYLGLPDKTEETVKEDGWLHSGDLGYIDPKGNLII 503

  Fly   475 VGRLKEMLI-RGGENIFPKEIEDFLNAH-PQVIEAHVI---------------------GVPDER 516
            .|||||::| .|||||.|..||:.:... |.|....:|                     |:|.:.
  Fly   504 SGRLKELIITAGGENIPPVHIEELIKKELPCVSNVLLIGDHRKYLTVLLSLKTKCDAKTGIPLDA 568

  Fly   517 LGEEVCAYVR------------------LEEGVDPASFTAETLKAYAKGKLAHF------KVPRY 557
            |.||...::|                  |:...|.|:..| ||:..||.||...      :..:|
  Fly   569 LREETIEWLRDLDIHETRLSELLNIPADLQLPNDTAALAA-TLEITAKPKLLEAIEEGIKRANKY 632

  Fly   558 VIPIDAFPKTTSGKIQKFKLV 578
            .|       :.:.|:|||.|:
  Fly   633 AI-------SNAQKVQKFALI 646

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12512NP_608924.1 PRK08315 43..592 CDD:236236 154/671 (23%)
FACL_like_2 229..577 CDD:213284 109/463 (24%)
hllNP_609696.1 AFD_class_I 62..680 CDD:388389 148/645 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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