DRSC/TRiP Functional Genomics Resources

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Protein Alignment vri and hlfb

DIOPT Version :9

Sequence 1:NP_001137792.1 Gene:vri / 33759 FlyBaseID:FBgn0016076 Length:729 Species:Drosophila melanogaster
Sequence 2:XP_005156391.1 Gene:hlfb / 557886 ZFINID:ZDB-GENE-110420-3 Length:300 Species:Danio rerio


Alignment Length:249 Identity:73/249 - (29%)
Similarity:104/249 - (41%) Gaps:59/249 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 SNNKFPRIQAQ-SNNSHLQHQQQLQQKLAQLHHYSQQKLSGSDFPYGPRPPTGGKEEKLLLLAPP 107
            |.|..|...|| ..|.|..|.||.||   |.|...||::|   .|.||        ..::.|:  
Zfish    88 SENGIPSSPAQHDQNLHQHHHQQQQQ---QQHQQQQQQVS---MPQGP--------ISVMDLS-- 136

  Fly   108 GKLYPEASVSTAMPEVLSGTPTNSHNKANIAMMNNVRLSNISPTLSMNGSSNEASNLHPLSMY-G 171
                 ..|:.||:      :|.|        .:::...|.:.|      |.|..|.:.|.::: .
Zfish   137 -----SRSIHTAI------SPQN--------CLHSPGRSVLPP------SRNTPSPVDPEALHIP 176

  Fly   172 GSISPQSNDSGMSDSLGKYVPGSGYGDGMMAQSPSQGGNGPQSALTAAQKELFSQRKQREFTPDN 236
            .|..|...|..:|.     |||....|....:. |:....||..:..|:|         .|.||:
Zfish   177 VSYEPDPADLALSS-----VPGQEVFDPRKRKF-SEEELKPQPMIKKARK---------IFIPDD 226

  Fly   237 -KKDESYWDRRRRNNEAAKRSREKRRYNDMVLEQRVIELTKENHVLKAQLDAIR 289
             |:||.||.|||:||.||||||:.||..:..:..|...|.|||..|:.::..:|
Zfish   227 LKQDEKYWARRRKNNVAAKRSRDARRLKENQIAIRAGFLEKENMALRQEVADLR 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vriNP_001137792.1 bZIP_NFIL3 238..297 CDD:269842 24/52 (46%)
coiled coil 239..297 CDD:269842 24/51 (47%)
hlfbXP_005156391.1 bZIP_HLF 230..288 CDD:269843 24/51 (47%)
coiled coil 230..288 CDD:269843 24/51 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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