DRSC/TRiP Functional Genomics Resources

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Protein Alignment vri and nfil3

DIOPT Version :9

Sequence 1:NP_001137792.1 Gene:vri / 33759 FlyBaseID:FBgn0016076 Length:729 Species:Drosophila melanogaster
Sequence 2:NP_001004120.1 Gene:nfil3 / 445509 ZFINID:ZDB-GENE-040822-28 Length:462 Species:Danio rerio


Alignment Length:592 Identity:142/592 - (23%)
Similarity:219/592 - (36%) Gaps:198/592 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   186 SLGKYVPGSG-YG--DGMMAQSPSQGG-----NGPQSALTAAQKELFSQRKQREFTPDNKKDESY 242
            ::.|..|.|| ||  |.::.....||.     |...|.|....|.. |.|::|||.||.|||..|
Zfish     3 AIKKEPPCSGPYGGEDALVLAVALQGTDRDLINHKLSTLPFKSKST-SCRRKREFIPDEKKDNLY 66

  Fly   243 WDRRRRNNEAAKRSREKRRYNDMVLEQRVIELTKENHVLKAQLDAIRDKF-------------NI 294
            |:|||:|||||||||||||.||||||.:::.|.:||..|||:|.:::.:|             ||
Zfish    67 WERRRKNNEAAKRSREKRRLNDMVLENKLMALGEENASLKAELLSLKLRFGLVSSAAYAQEVQNI 131

  Fly   295 SGENLVSVEKILASLPTSEQVLSNTKRAKMSGSGGSSSGSSPSGSGSGEGS-----PQGGHNGYP 354
            |.......:..::...|.:...|:.:..:::.|..|....||. |...:||     .||      
Zfish   132 STSTAALYQDFMSPSATKDSYPSDLEPTRLTSSCISVIKHSPH-SALSDGSDSSTVTQG------ 189

  Fly   355 VGPPLSPLIYGPNGNARPEATVKSVHHIHHAGVAPPPTHLQQLVVPQSQTQHLYQPQPQQHQPHQ 419
                 ||||                      .::..|..::|              :|.:...:.
Zfish   190 -----SPLI----------------------NISRSPDSIKQ--------------EPLETGRYS 213

  Fly   420 QQQISQPPQQQQQQ----------QEPSP-----SAGSSSPVISDPHNRPPSTTIANLQVQLQQA 469
            :::||  |.:..:.          .:|||     .:.|:||..||..:...|.:..|   :.:|.
Zfish   214 KERIS--PYELYRNYLSSPFPGNFSQPSPFLQIARSSSNSPRTSDGDDGAVSKSSDN---EDEQQ 273

  Fly   470 LNRNVRPEDLDSLRKVVAAGALYNAAAVVGAPPPPPSAGLYVPAPSAYKDHLEAAAAWSHNVEAA 534
            :.:...|...||...:|:.                    |.||..|        |:|..|.:.. 
Zfish   274 VPKGPVPTRSDSQSVIVST--------------------LKVPDSS--------ASALPHKLRI- 309

  Fly   535 VSSSAVDAVSSSSVSGSAASVLNLSRRACSPSYEHMLSSTTSSTLSSASSSGAVSGDDEQEHEPA 599
                             .|..:.:...|..|.||           ||..||..|.....:.::.:
Zfish   310 -----------------KARAIQIKVEAIDPDYE-----------SSGKSSFPVDMSARRRYQMS 346

  Fly   600 HMA-PLQLQRS-SPQQGSDAN----NCLPLKLRHKSHLGDKDAAATALLSLQHIKQEPNCSRASP 658
            ..| |..:|.| ||......|    |..| |..|:.|       ..||.|.:: :|.|:..|..|
Zfish   347 QCATPEYIQSSLSPMSFQMTNVQDWNHRP-KEWHEDH-------QEALTSYKY-RQCPDSPRPVP 402

  Fly   659 PAWNDGGDNSSDERDSGISIASAEWTAQLQRKLLAPKEANVVTSAERDQM-LKSQLERLESEVAS 722
                                          .||:...|.:...::|.:.: ||..:|.|.:|||.
Zfish   403 ------------------------------NKLIVDLENDSYANSESENLYLKQGIEDLSAEVAC 437

  Fly   723 IKMILAE 729
            :|.::::
Zfish   438 LKRLISK 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vriNP_001137792.1 bZIP_NFIL3 238..297 CDD:269842 37/71 (52%)
coiled coil 239..297 CDD:269842 36/70 (51%)
nfil3NP_001004120.1 bZIP_NFIL3 62..121 CDD:269842 34/58 (59%)
coiled coil 63..121 CDD:269842 33/57 (58%)
Basic motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU00978 69..85 14/15 (93%)
Leucine-zipper. /evidence=ECO:0000255|PROSITE-ProRule:PRU00978 91..112 9/20 (45%)
Vert_IL3-reg_TF 120..452 CDD:284047 87/474 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 172..210 14/85 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 238..289 14/53 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170578028
Domainoid 1 1.000 74 1.000 Domainoid score I9070
eggNOG 1 0.900 - - E1_KOG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1450431at2759
OrthoFinder 1 1.000 - - FOG0002055
OrthoInspector 1 1.000 - - otm24853
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR15284
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5136
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
98.880

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