DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vri and nfil3-5

DIOPT Version :9

Sequence 1:NP_001137792.1 Gene:vri / 33759 FlyBaseID:FBgn0016076 Length:729 Species:Drosophila melanogaster
Sequence 2:NP_001183987.1 Gene:nfil3-5 / 335737 ZFINID:ZDB-GENE-030131-7677 Length:597 Species:Danio rerio


Alignment Length:623 Identity:165/623 - (26%)
Similarity:237/623 - (38%) Gaps:158/623 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 SISPQSNDSGMS-DSLGKYVPGSGYGDGMMAQSPSQGGNGPQSALTAAQKELFSQRKQREFTPDN 236
            ||:..:.:||.| ::|..:   |.|.:.:  .|| |..:.|:.......|...|.|::|||..|.
Zfish     3 SINLPTQNSGSSLETLETF---SNYNESL--PSP-QMSSPPRQGRLIKPKPNSSCRRKREFISDE 61

  Fly   237 KKDESYWDRRRRNNEAAKRSREKRRYNDMVLEQRVIELTKENHVLKAQLDAIRDKFNISGENLVS 301
            |||.|||::||:|||||||||||||.||||||.|||.|..||..||.:|..::.:|.:...    
Zfish    62 KKDASYWEKRRKNNEAAKRSREKRRLNDMVLENRVIALNDENVRLKTELLQLKLRFGLISS---- 122

  Fly   302 VEKILASLPTSEQVLSNTKRAKMSGSGGSSSGS-SPSGSGSGEGSPQ-----------------G 348
                 ||.....|.:||...|..:|:.||.:.| :|..|.||..|..                 .
Zfish   123 -----ASYMEKTQQISNGAEAAANGANGSGATSGNPYFSSSGYSSASQVMMNSDSSEAEQSTRTE 182

  Fly   349 GHNGYPVGPPLSPLIYGPNGNAR--PEATVKSVHHIHHAGVAPPPTHLQQLVVPQSQTQH----- 406
            .|...|...|...|....:|::|  ||.....:.| ..:|:  ....|:..|:......|     
Zfish   183 RHTMLPKYSPRGSLSDMSDGSSRDSPEPINFDIKH-ESSGM--DINRLEASVLNGMFNGHQSLGR 244

  Fly   407 LYQPQPQQHQPHQQQQISQ--PPQQQQQQQEPSPSAGSSS-PV----ISDPHNRPPSTTIANLQV 464
            |...|||:.:  ||:.:|.  ||....|:......:|||| ||    :.|...:..|.|..|.|:
Zfish   245 LESNQPQEME--QQESVSNPAPPSATPQRSVILFRSGSSSYPVESQRVEDVDQQEASQTQQNGQI 307

  Fly   465 Q--LQQALNRNVRPEDLDSLRKVVAAGALYNAAAVVGAPPPPPSAGLYVPAPSAYKDHLEAAAAW 527
            .  .|...|..:|.:.|::|.:|....|..:                 |.:||....:.:|.|..
Zfish   308 THFNQTGCNLPLRHDGLETLSEVAQQLARRS-----------------VDSPSYEFTNGKADAGE 355

  Fly   528 SHNV-----EAAVSSSAVDAVSSSSVSGSAASVLN------------------------LSRRAC 563
            :...     :..|.......|..|:.:..|..:||                        |:...|
Zfish   356 NRRFVIQQQDLTVQGQCRSQVQDSTPNSFAPDLLNEAGKALVYQRTNPYLGTLNEEPPVLTYEGC 420

  Fly   564 SPS----YEHMLSSTTSSTLSS--ASSSGAVSGDDEQ-------------EHEPAHMAPLQLQRS 609
            :.:    .||..|...||:...  .||....|.|||.             .|:.| .:|..:...
Zfish   421 TRADGFYQEHSSSGKDSSSSDGDPRSSDKEASTDDESPSSSSSDIGGYHATHQSA-SSPTMVTSD 484

  Fly   610 SPQ----QGSDANNCLPLKLRHK----SHLGDKDAAATA-------------LLSLQHIKQEPN- 652
            :.|    ||......||.|||.|    |:.|.:|..||.             .|:|..:.|:.. 
Zfish   485 AYQYGDNQGEMKGTALPHKLRLKYRALSNGGSQDVQATTAAMSPESALPQHPYLALAQVNQQQGS 549

  Fly   653 ---------------CSRASPPAWNDGGDNSSDERDSG 675
                           |::.||....|.|...|.:|.||
Zfish   550 SFGNKEGESETADELCTQRSPSRDKDMGWKESGKRSSG 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vriNP_001137792.1 bZIP_NFIL3 238..297 CDD:269842 36/58 (62%)
coiled coil 239..297 CDD:269842 35/57 (61%)
nfil3-5NP_001183987.1 bZIP_NFIL3 63..122 CDD:269842 36/58 (62%)
coiled coil 64..122 CDD:269842 35/57 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170578027
Domainoid 1 1.000 74 1.000 Domainoid score I9070
eggNOG 1 0.900 - - E1_KOG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1450431at2759
OrthoFinder 1 1.000 - - FOG0002055
OrthoInspector 1 1.000 - - otm24853
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR15284
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
98.850

Return to query results.
Submit another query.