DRSC/TRiP Functional Genomics Resources

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Protein Alignment Bsg25D and noca-2

DIOPT Version :9

Sequence 1:NP_001260093.1 Gene:Bsg25D / 33757 FlyBaseID:FBgn0000228 Length:1118 Species:Drosophila melanogaster
Sequence 2:NP_509950.3 Gene:noca-2 / 181354 WormBaseID:WBGene00011444 Length:794 Species:Caenorhabditis elegans


Alignment Length:986 Identity:191/986 - (19%)
Similarity:331/986 - (33%) Gaps:296/986 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 QKLYQMFRSCET-QCGLLDEKSLLKLCSLLELRDQGSALI-ASLGGSHQLGVSFGQFKEALLNFL 72
            ::|.::|.||.: :.||||:..||.||..|.|....:::| ..|...|  .::|.|||:..|.||
 Worm    16 KELKRLFNSCNSDRNGLLDKDGLLILCEKLNLSIFANSIIDRVLCNDH--AINFNQFKDRFLLFL 78

  Fly    73 GSEFDGNTSSGFIERSLVITDEPLNNTYIESPPESSDREVSPKLVVGTKKYGRRSRPQQGIYELS 137
                                            ||..|      |..|                  
 Worm    79 --------------------------------PEIID------LASG------------------ 87

  Fly   138 VTDSDNTDEDQLQQQQNQRSLNGCDELGVQVQRSSSQSDLPGSRRLR--SVHTSGSKLKRCASLP 200
                            ||      |||.:...:|||...:..::||.  .|||.      |.|  
 Worm    88 ----------------NQ------DELLIAAYKSSSSLGIKDTQRLTRYDVHTI------CES-- 122

  Fly   201 ARRKMNSNTTGATTSPTAAAKLKQLSIQSQAQHSSSVESLGHRLATNPAPSSEHWRCYHGGRWSC 265
                              .::|..||:       ..|..:..:.|.:...|...:...:..|   
 Worm   123 ------------------TSELDLLSL-------GDVNGIFDKCAISGKVSLNEFVMQYRSR--- 159

  Fly   266 CKDTVTPQQLETISVHSIMEAWELASIPNTRNLLHVLGFDEEEEVN----LQQLTKA---LEE-- 321
                    |..|..:|.|.:::.::||    ||...|..:...|.:    ::.||.:   |||  
 Worm   160 --------QKMTEEIHFIADSYRISSI----NLFETLDVNNSGEADHSAVIEYLTTSGLKLEEAI 212

  Fly   322 --------------ELRGIDGDHEQSNMLRALAALQATE----------LGNYRLAYRQQHEENL 362
                          .|.|: |::.:|.:...|...|.:.          |.|||...|:......
 Worm   213 SLLKDFGQPTSQMISLVGL-GNYLESTLSHLLNNSQVSARAAFFCMKSLLENYRCTVREFEMRCE 276

  Fly   363 KLRADNKAANQRVALLAVEVDERHASLEDNSKKQVQQLEQRHASMVREITLRMTNDRDHWTSMTG 427
            .::.....||||..:|..|:|:...|:|.:...:::::|:|....:..:..:...:|........
 Worm   277 HMQKQIHIANQRRNMLIEELDQNQQSIEASYNNRLKEMEERCRGRIAAMEEKFRMERHEMQKEIE 341

  Fly   428 KLEAQLKSLEQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQELAQTSSSIGGT 492
            .:|..|..:.|.|..|:.:|:||...|..:.:|.:.....:..|.::|.:|..:|.:....    
 Worm   342 NIEKDLSLVRQNETSLKNKLQLVERHNKRITTELEDQTDAVNALEQENRELRADLRKKQQF---- 402

  Fly   493 PEHSPLRPRRHSEDKEEEMLQLMEKLAALQMENAQLRDKTDELTIEIE-SLNVE----------- 545
                     |.||| ..:::...:|:..:...|.:||:|..:::...: .|:.|           
 Worm   403 ---------RVSED-NAKIIAWKQKVELMVAHNKRLREKLRDISKNSKCDLSPEAYIQWTPPFRS 457

  Fly   546 ---LIRSKTKAKKQEKQEKQEDQESAATATKRRGDSPSKTHLTEESPRLGKQRKCTEGEQSDASN 607
               |||.:...|.....|...:.||.....:|:              ||.|:|            
 Worm   458 QLLLIRKRRIQKGDTLSEMDSEPESIFYRRRRK--------------RLRKKR------------ 496

  Fly   608 SGDWLALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRSLTPESRSKELETSLEQMQRAYE 672
                     :..|.......:.|...|:.|.......::..|......||:.:.|||....:   
 Worm   497 ---------DRMRRYENIHNIQSGSSRINEDGNLTVFSENSRKSLLSPRSRGMLTSLNDNDQ--- 549

  Fly   673 DCEDYWQTKLSEERQLFEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKDGRLSPIDERDMLE 737
                    .||.:|.|..:.:.  .|...:|...|.|| ..|.:||.:. |....|...::.|.|
 Worm   550 --------NLSSDRLLINRAKN--TDRAKKSTTAFDEL-PHVNDYEIEI-KMLHSSIAAQKQMYE 602

  Fly   738 QQYSELEAEAAQLRSSSIQMLEEKAQEISSL--QSEIEDLR---------QRLGESVEILT---G 788
            .|...|..:.:|     ||..||.:..:.||  :.:|.|..         ::.|....:.|   .
 Worm   603 GQILNLTRKLSQ-----IQNAEESSSRLYSLFERYKINDTESKSPRSHGLEKNGSVNRVATSFCA 662

  Fly   789 ACELTSESVAQLSAEAGKSPASSPISYLWLQSTIQEPAKSLADSKDEATASAIELLGGSPSHKTA 853
            .|......:.:|:...|.|..:         .|:::|..::.:.....|.     :|...:..|:
 Worm   663 RCVKVEPKINELNIIVGGSVKN---------MTVEDPVPTIMNHDHLHTE-----VGRLKARLTS 713

  Fly   854 SRNN-----------LTTSETSIFSTTPFESSQSGPSPTNSGNSNAYGANPGPAPISKPKRSQ-- 905
            .|..           ||:|...:..:|.|:||:|.|....  |..::.......|:|:...|.  
 Worm   714 VRCKVAEITAVMALPLTSSRHHLMPSTDFQSSKSQPFAMR--NQRSFADLRERTPLSEKSESSRD 776

  Fly   906 ---SPQQAAAS 913
               .|.|...|
 Worm   777 CVIDPSQFTPS 787

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Bsg25DNP_001260093.1 SMC_prok_B <306..545 CDD:274008 53/272 (19%)
Smc <428..777 CDD:224117 74/374 (20%)
Spc7_N <769..937 CDD:292045 30/173 (17%)
GAS 951..>1053 CDD:290562
noca-2NP_509950.3 SMC_prok_A <258..>437 CDD:274009 40/192 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160160073
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003212
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR18905
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R8624
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
55.020

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