DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn11 and Stambpl1

DIOPT Version :9

Sequence 1:NP_608905.1 Gene:Rpn11 / 33738 FlyBaseID:FBgn0028694 Length:308 Species:Drosophila melanogaster
Sequence 2:NP_001347645.1 Gene:Stambpl1 / 76630 MGIID:1923880 Length:436 Species:Mus musculus


Alignment Length:122 Identity:34/122 - (27%)
Similarity:59/122 - (48%) Gaps:19/122 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 MEVMGLMLGEFV-DDYTVQVIDVFAMPQTGTG---VSVEAVDPVFQAKMLDMLKQTGRPEMVVGW 109
            :|..|::.|:.. :::|:..:   .:|:...|   ..||.|:.:|..:     .|.|.  :.:||
Mouse   291 IETCGILCGKLTHNEFTITHV---VVPKQSAGPDYCDVENVEELFNVQ-----DQHGL--LTLGW 345

  Fly   110 YHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINPNML 166
            .|:||....:||.||::|..|::.:...|:|:|..|.....|     .|||.|..||
Mouse   346 IHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDTG-----IFRLTNAGML 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn11NP_608905.1 MPN_RPN11_CSN5 19..284 CDD:163700 34/122 (28%)
Stambpl1NP_001347645.1 USP8_dimer 28..129 CDD:370218
Tig <119..>195 CDD:223618
MPN_AMSH_like 266..436 CDD:163697 34/122 (28%)
JAMM motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01182 347..360 5/12 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1310
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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