DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn11 and Mpnd

DIOPT Version :9

Sequence 1:NP_608905.1 Gene:Rpn11 / 33738 FlyBaseID:FBgn0028694 Length:308 Species:Drosophila melanogaster
Sequence 2:XP_038940132.1 Gene:Mpnd / 681944 RGDID:1589335 Length:488 Species:Rattus norvegicus


Alignment Length:346 Identity:71/346 - (20%)
Similarity:116/346 - (33%) Gaps:126/346 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 GGAMPQAAPP------TDAPV-------VDTAEQ----VYISSLALLKMLKHGRAGVP------- 48
            |...|:|.||      ...||       .|:|..    |.::|.|.:...:.....|.       
  Rat   204 GSLEPEATPPGKRVDKVRVPVRYCMLGSRDSARNPHTLVEVTSFAAINKFQPFNVAVSSNVLFLL 268

  Fly    49 --------MEVMGLMLGEFVDDYTVQVIDVF-AMP------QTGTGVSVEAVDPVFQAKMLDMLK 98
                    .||:|.:.|.:  |...|::.|. |.|      ...|..:||  :.:.|...|    
  Rat   269 DFHCHLTRSEVVGYLGGRW--DINNQMLTVLRAFPCRSRLGDPDTAATVE--EEIHQVLFL---- 325

  Fly    99 QTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERA-------VAVVVDPIQS----VKGK 152
               |...:||||||||......|..||:.|..::...:.:       :|::..|..|    .:.|
  Rat   326 ---RGLSLVGWYHSHPHSPAAPSLQDIDAQMEYQLRLQGSNNGFQPCLALLCSPYYSGNPGPESK 387

  Fly   153 VVIDAFRLINPNMLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLN 217
            :.  .|.::.|        |.|        |:||           .|.|.::.....::...|.|
  Rat   388 IC--PFWVMPP--------PEQ--------QRPS-----------DYGIPMDVEMAYVQDSFLTN 423

  Fly   218 LHKKSWKDGLTLSDYNEHCSINEDTVAEMLDLAKNYNKSLED----EEKMTPEQLAI----KNVG 274
                                   |.:.||:.|.:.| |...|    :|..:||...:    .::.
  Rat   424 -----------------------DVLQEMMMLVEFY-KGAPDLVKFQEAWSPEHTYLDKLKMSLA 464

  Fly   275 KQDPKR----HLEEKVDKVMQ 291
            .:.||.    |:.|:|..|::
  Rat   465 SRTPKDQGMCHVLEQVCSVLK 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn11NP_608905.1 MPN_RPN11_CSN5 19..284 CDD:163700 63/320 (20%)
MpndXP_038940132.1 RAMA 57..157 CDD:408526
MPN_2A_DUB 252..437 CDD:163698 48/248 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1310
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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