DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn11 and psmd14

DIOPT Version :9

Sequence 1:NP_608905.1 Gene:Rpn11 / 33738 FlyBaseID:FBgn0028694 Length:308 Species:Drosophila melanogaster
Sequence 2:NP_001025636.1 Gene:psmd14 / 595024 XenbaseID:XB-GENE-950703 Length:310 Species:Xenopus tropicalis


Alignment Length:310 Identity:273/310 - (88%)
Similarity:290/310 - (93%) Gaps:2/310 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDRLLRLGGAMP--QAAPPTDAPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDY 63
            |||||||||.||  ...||||||.|||||||||||||||||||||||||||||||||||||||||
 Frog     1 MDRLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDY 65

  Fly    64 TVQVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQ 128
            ||:|||||||||:||||||||||||||||||||||||||||||||||||||||||||||||||||
 Frog    66 TVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQ 130

  Fly   129 QSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINPNMLVLGQEPRQTTSNLGHLQKPSVQALIHG 193
            ||||||||||||||||||||||||||||||||||.||:|||.||||||||||||.|||:||||||
 Frog   131 QSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHG 195

  Fly   194 LNRHYYSISINYRKNELEQKMLLNLHKKSWKDGLTLSDYNEHCSINEDTVAEMLDLAKNYNKSLE 258
            ||||||||:|||||||||||||||||||||.:||||.:|:|||.:||..|.|||:|||||||::|
 Frog   196 LNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQNYSEHCKLNETVVKEMLELAKNYNKAVE 260

  Fly   259 DEEKMTPEQLAIKNVGKQDPKRHLEEKVDKVMQNNIVQCLGAMLDTIVFK 308
            :|:|||||||||||||||||||||||.||.:|.:||||||.|||||:|||
 Frog   261 EEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAMLDTVVFK 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn11NP_608905.1 MPN_RPN11_CSN5 19..284 CDD:163700 240/264 (91%)
psmd14NP_001025636.1 MPN_RPN11_CSN5 21..286 CDD:163700 240/264 (91%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 224 1.000 Domainoid score I2495
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4240
Inparanoid 1 1.050 538 1.000 Inparanoid score I1166
OMA 1 1.010 - - QHG53757
OrthoDB 1 1.010 - - D1031881at2759
OrthoFinder 1 1.000 - - FOG0004641
OrthoInspector 1 1.000 - - oto104622
Panther 1 1.100 - - LDO PTHR10410
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1200
SonicParanoid 1 1.000 - - X3258
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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