DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn11 and psmd7

DIOPT Version :10

Sequence 1:NP_608905.1 Gene:Rpn11 / 33738 FlyBaseID:FBgn0028694 Length:308 Species:Drosophila melanogaster
Sequence 2:NP_956083.1 Gene:psmd7 / 327330 ZFINID:ZDB-GENE-030131-5541 Length:327 Species:Danio rerio


Alignment Length:151 Identity:43/151 - (28%)
Similarity:66/151 - (43%) Gaps:31/151 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 MPQAAPPTDAPVVDTAEQVYISSLALLKMLKH----GRAGVPMEVMGLMLGEFVDDYTVQVIDV- 70
            ||..|          .|:|.:..|.||.::.|    |:.|....|:|::||    .:..:|:|| 
Zfish     1 MPDLA----------VERVVVHPLVLLSVVDHFNRIGKVGSQKRVVGVLLG----SWQKKVLDVS 51

  Fly    71 --FAMP--QTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSF 131
              ||:|  :.....||..:|..:...|..|.|:....|.:|||||:.|.    |...||...:..
Zfish    52 NSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPK----LHKNDIAINELM 112

  Fly   132 EALSERAVAVVVDPIQSVKGK 152
            :.....:|.|::|    ||.|
Zfish   113 KQYCSNSVLVIID----VKPK 129

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn11NP_608905.1 MPN_RPN11_CSN5 19..284 CDD:163700 40/143 (28%)
psmd7NP_956083.1 MPN_RPN7_8 7..287 CDD:163693 40/135 (30%)

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