DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn11 and Eif3f

DIOPT Version :9

Sequence 1:NP_608905.1 Gene:Rpn11 / 33738 FlyBaseID:FBgn0028694 Length:308 Species:Drosophila melanogaster
Sequence 2:NP_001264231.1 Gene:Eif3f / 293427 RGDID:1306112 Length:361 Species:Rattus norvegicus


Alignment Length:158 Identity:44/158 - (27%)
Similarity:73/158 - (46%) Gaps:36/158 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 GGAMPQAAPPTDAPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVQVIDVFA 72
            ||.:.:..|...|.:||:.|:           ...|.|    .|:|.:||. ||.::|:|.:.|:
  Rat    92 GGRVVRLHPVILASIVDSYER-----------RNEGAA----RVIGTLLGT-VDKHSVEVTNCFS 140

  Fly    73 MPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQS---FEAL 134
            :|...:...| |||..|...|.::.|:....|:::|||         .:|.|| |:.|   .|..
  Rat   141 VPHNESEDEV-AVDMEFAKNMYELHKKVSPNELILGWY---------ATGHDI-TEHSVLIHEYY 194

  Fly   135 SERA---VAVVVDP-IQSVKGKVVIDAF 158
            |..|   :.:.||. :|:  |::.|.|:
  Rat   195 SREAPNPIHLTVDTGLQN--GRMSIKAY 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn11NP_608905.1 MPN_RPN11_CSN5 19..284 CDD:163700 41/147 (28%)
Eif3fNP_001264231.1 MPN_eIF3f 96..358 CDD:163695 42/154 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1310
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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