DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn11 and rpn-8

DIOPT Version :9

Sequence 1:NP_608905.1 Gene:Rpn11 / 33738 FlyBaseID:FBgn0028694 Length:308 Species:Drosophila melanogaster
Sequence 2:NP_491319.1 Gene:rpn-8 / 172009 WormBaseID:WBGene00004464 Length:362 Species:Caenorhabditis elegans


Alignment Length:323 Identity:68/323 - (21%)
Similarity:117/323 - (36%) Gaps:78/323 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 QVYISSLALLKMLKH----GRAGVPMEVMGLMLGEFVDDYTVQVIDVFAMP--QTGTGVSVEAVD 86
            :|.:..|.||.::.|    .:......|:|::||....|.|:.:.:.||:|  :.....|...:|
 Worm    40 KVTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKSTWFLD 104

  Fly    87 PVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVD------- 144
            ..:...|..|..:....|.:|||||:.|.    |...||...:..:......|.|::|       
 Worm   105 MDYLESMYGMFYKVAAKEKIVGWYHTGPK----LHKNDIAINEQLKRFCPNPVLVIIDAEPKNIG 165

  Fly   145 -------PIQSV--KGKVVIDAFRLINPNMLVLGQEPR--------------QTTSNLG------ 180
                   .:|.|  .|...|..|..:..:   :|.|..              ||...|.      
 Worm   166 LPTEAYIEVQEVHDDGTPPIKTFEHVPSD---IGAEEAEEVGVEHLLRDIKDQTAGTLSQRITDQ 227

  Fly   181 -------HLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWKDGLTLSDY--NEHC 236
                   ..|..|::..:|.:.|.  ::.:|:......|: :|||     ...:|..||  :::.
 Worm   228 LMGLRGLQSQLESIEKYLHDIVRG--TLPVNHHVIYYVQE-VLNL-----LPDVTHPDYIVSQNV 284

  Fly   237 SINED-----------TVAEMLDLAKNYNKSLEDEEKMTPEQLAIKNVGKQDPKRHLEEKVDK 288
            ..|:.           :|..:.:|..| ..||:..||......|.|...::|.|...:||.|:
 Worm   285 QTNDQLMCVYMGSLVRSVVALHNLIDN-KISLQKAEKEQETGEAEKKKDEKDKKDKKDEKKDE 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn11NP_608905.1 MPN_RPN11_CSN5 19..284 CDD:163700 65/317 (21%)
rpn-8NP_491319.1 MPN_RPN7_8 39..320 CDD:163693 59/295 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1310
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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