DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn11 and COPS6

DIOPT Version :10

Sequence 1:NP_608905.1 Gene:Rpn11 / 33738 FlyBaseID:FBgn0028694 Length:308 Species:Drosophila melanogaster
Sequence 2:NP_006824.2 Gene:COPS6 / 10980 HGNCID:21749 Length:327 Species:Homo sapiens


Alignment Length:217 Identity:52/217 - (23%)
Similarity:82/217 - (37%) Gaps:53/217 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 VIDVFAMPQTGTGVSVEAVDPVFQAKMLD----MLKQTGRPEMVVGWYHSHPGFGCWLSGVDINT 127
            |..|.|...||: ||| |:.|:....:.|    |..|.|||..|:|......      .|.:|..
Human    27 VPSVMACGVTGS-VSV-ALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQ------EGRNIEV 83

  Fly   128 QQSFEALSERAVAVVVDPIQSVKGKVVID---------AFRLINPNMLVLGQEPRQTTSNLGHLQ 183
            ..|||.||           .:|:.|::||         .|:.:...:..||.   .||..     
Human    84 MNSFELLS-----------HTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGW---YTTGG----- 129

  Fly   184 KPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWKDGLTLSDYNEHCS-INEDTVAEML 247
             |...:.|| :::....|        :|..:.|.|:..:....|.:|.:..... ||.:  |.||
Human   130 -PPDPSDIH-VHKQVCEI--------IESPLFLKLNPMTKHTDLPVSVFESVIDIINGE--ATML 182

  Fly   248 DLAKNYNKSLEDEEKMTPEQLA 269
            .....|..:.|:.|::..:.:|
Human   183 FAELTYTLATEEAERIGVDHVA 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn11NP_608905.1 MPN_RPN11_CSN5 19..284 CDD:163700 52/217 (24%)
COPS6NP_006824.2 MPN_CSN6 39..321 CDD:163694 47/204 (23%)
Interaction with Vpr 211..327
Blue background indicates that the domain is not in the aligned region.

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