DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn11 and STAMBP

DIOPT Version :10

Sequence 1:NP_608905.1 Gene:Rpn11 / 33738 FlyBaseID:FBgn0028694 Length:308 Species:Drosophila melanogaster
Sequence 2:NP_006454.1 Gene:STAMBP / 10617 HGNCID:16950 Length:424 Species:Homo sapiens


Alignment Length:151 Identity:35/151 - (23%)
Similarity:69/151 - (45%) Gaps:20/151 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDRLLRLGGAMPQAAPPTDAPVVDTAEQVYISSLALLKMLKHGRAGVP--MEVMGLMLGEFV-DD 62
            :||.|:.|......:.||    :|....|.:......:.|:...|...  :|..|::.|:.: ::
Human   233 VDRSLKPGALSNSESIPT----IDGLRHVVVPGRLCPQFLQLASANTARGVETCGILCGKLMRNE 293

  Fly    63 YTVQVIDVFAMPQTGTG---VSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVD 124
            :|:..:   .:|:...|   .:.|..:.:|       |.|..:..:.:||.|:||....:||.||
Human   294 FTITHV---LIPKQSAGSDYCNTENEEELF-------LIQDQQGLITLGWIHTHPTQTAFLSSVD 348

  Fly   125 INTQQSFEALSERAVAVVVDP 145
            ::|..|::.:...:||:|..|
Human   349 LHTHCSYQMMLPESVAIVCSP 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn11NP_608905.1 MPN_RPN11_CSN5 19..284 CDD:163700 29/133 (22%)
STAMBPNP_006454.1 Interaction with CHMP3. /evidence=ECO:0000269|PubMed:17146056 1..127
USP8_dimer 13..117 CDD:462647
Interaction with STAM. /evidence=ECO:0000269|PubMed:10383417 227..231
MPN_AMSH_like 254..424 CDD:163697 28/126 (22%)
JAMM motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01182 335..348 5/12 (42%)
Blue background indicates that the domain is not in the aligned region.

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