DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn11 and brcc3

DIOPT Version :9

Sequence 1:NP_608905.1 Gene:Rpn11 / 33738 FlyBaseID:FBgn0028694 Length:308 Species:Drosophila melanogaster
Sequence 2:XP_009293985.1 Gene:brcc3 / 100333845 ZFINID:ZDB-GENE-100215-1 Length:287 Species:Danio rerio


Alignment Length:150 Identity:42/150 - (28%)
Similarity:69/150 - (46%) Gaps:26/150 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVQVIDVFAM-------------PQTGTGV 80
            |::.|.|.|..:.|..:....|||||.:||...:..|.:..|..:             |:..:..
Zfish    33 VHLESDAFLVCMNHALSTEKEEVMGLCIGEVDTNRIVHIHSVIILRRSDKRKDRVEISPEQLSAA 97

  Fly    81 SVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVV--- 142
            |.||      .::.:|   ||||..|||||||||....|.|.||:.||..::.:.:..|.::   
Zfish    98 STEA------ERLAEM---TGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSC 153

  Fly   143 -VDPIQSVKGKVVIDAFRLI 161
             ::...:..|:|:...|:.:
Zfish   154 FIEDKNTKTGRVLYTCFQSV 173

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn11NP_608905.1 MPN_RPN11_CSN5 19..284 CDD:163700 42/149 (28%)
brcc3XP_009293985.1 MPN_BRCC36 30..267 CDD:163699 42/149 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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