DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn11 and stambp

DIOPT Version :9

Sequence 1:NP_608905.1 Gene:Rpn11 / 33738 FlyBaseID:FBgn0028694 Length:308 Species:Drosophila melanogaster
Sequence 2:NP_001120237.1 Gene:stambp / 100145287 XenbaseID:XB-GENE-5926871 Length:416 Species:Xenopus tropicalis


Alignment Length:125 Identity:32/125 - (25%)
Similarity:61/125 - (48%) Gaps:19/125 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 MEVMGLMLGEFV-DDYTVQVIDVFAMPQTGTG---VSVEAVDPVFQAKMLDMLKQTGRPEMVVGW 109
            :|..|::.|:.: :::||..:.|   |:...|   .:.|:.:.:|       |.|..:..:.:||
 Frog   271 VETCGILCGKLMQNEFTVTHVIV---PKQSGGPDYCNTESEEELF-------LIQDQQGLITLGW 325

  Fly   110 YHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINPNMLVLG 169
            .|:||....:||.||::|..|::.:...:||:|..|.....|     .|:|.:..|..:|
 Frog   326 IHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQETG-----FFKLTDYGMKEIG 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn11NP_608905.1 MPN_RPN11_CSN5 19..284 CDD:163700 32/125 (26%)
stambpNP_001120237.1 USP8_dimer 13..115 CDD:286108
MPN_AMSH_like 246..416 CDD:163697 32/125 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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