DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment His3.3A and RGD1564447

DIOPT Version :9

Sequence 1:NP_001260082.1 Gene:His3.3A / 33736 FlyBaseID:FBgn0014857 Length:136 Species:Drosophila melanogaster
Sequence 2:XP_346042.2 Gene:RGD1564447 / 367254 RGDID:1564447 Length:136 Species:Rattus norvegicus


Alignment Length:136 Identity:112/136 - (82%)
Similarity:114/136 - (83%) Gaps:0/136 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRK 65
            |..|||:.||||||||||||||||||.|||.|||||||||||||||.||.|.|.|||.|||||.:
  Rat     1 MPHTKQSVRKSTGGKAPRKQLATKAAPKSALSTGGVKKPHRYRPGTGALGETRCYQKFTELLICE 65

  Fly    66 LPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130
            ||||||||||||||||||||||||...|||||||||||..||||||.||||.||||.||||||..
  Rat    66 LPFQRLVREIAQDFKTDLRFQSAATDVLQEASEAYLVGHSEDTNLCVIHAKHVTIMSKDIQLAHH 130

  Fly   131 IRGERA 136
            ||||.|
  Rat   131 IRGEHA 136

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
His3.3ANP_001260082.1 PTZ00018 1..136 CDD:185400 111/134 (83%)
RGD1564447XP_346042.2 PTZ00018 1..136 CDD:185400 111/134 (83%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166347486
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100119
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

Return to query results.
Submit another query.