Sequence 1: | NP_723044.1 | Gene: | Col4a1 / 33727 | FlyBaseID: | FBgn0000299 | Length: | 1779 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001189234.1 | Gene: | CG42342 / 7354466 | FlyBaseID: | FBgn0259244 | Length: | 831 | Species: | Drosophila melanogaster |
Alignment Length: | 813 | Identity: | 270/813 - (33%) |
---|---|---|---|
Similarity: | 329/813 - (40%) | Gaps: | 273/813 - (33%) |
- Green bases have known domain annotations that are detailed below.
Fly 532 RPGTPGAAGAPGQKGDAGRPGTPGQKGDMGIKGDVGGKCSSCRAGPKGDKGTSGLPGIPGKDGAR 596
Fly 597 GPPGERGYPGERGHDGINGQTGPPGEKGEDGRTGLPGATGEPGKPALCDLSLIEPLKGDKGYPGA 661
Fly 662 PGAKGVQGFKGAEGLPGIPGPKGEFG------FKGEKGLSGAPGNDGTPGRAGRDGYPGIPGQSI 720
Fly 721 KGEPGFHGRDGAKGDKGSFGRSGEKGEPGSCALDEIKMPAKGNKGEPGQTGMPGPPGEDGSPGER 785
Fly 786 GYTGLKGNTGPQGPPGVEGPRGLNGPRGEKGNQGAVGVPGNPGKDGLRGIPGRNGQPGPRGEPGI 850
Fly 851 SRPGPMGPPGLNGLQGEKGDRGPTGPIGFPGADGSVGYPGDRGDAGLPGVSGRPGIVGEKGDVGP 915
Fly 916 I-GPAGVAGPPGVPGIDGVRGRDGAKGEPGSPGLVGMPGNKGDRGAPGND--GPKGF-------- 969
Fly 970 AGVTGAPGKRGPAGIPGVSGAKGDKGATGLTGNDGPVGGRGPPGAPGLMGIKGDQGLAGAPGQQG 1034
Fly 1035 LDGMPGEKGNQGFPGLDGPPGLPGDASEKGQKGEPGPSGLRGDTGPAGTPGWPGEKGLPGLAVHG 1099
Fly 1100 RAGPPGEKGDQGRSGIDGR----DGINGEKGEQGLQGVWGQPGEKGSVGAPGIPGAPGMDGLPGA 1160
Fly 1161 AGAPGAVGYPGDRGDKGEPGLSGLPGLKGETGPVGLQGFTGAPGPKGERGIRGQPGLPATVPDIR 1225
Fly 1226 GDKGSQGERGYTGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDIGPRGEIGY 1290
Fly 1291 PGVTIK---GEKGLPGRPG---RNGRQGLIGAP 1317 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Col4a1 | NP_723044.1 | Collagen | 104..161 | CDD:189968 | |
Collagen | 322..380 | CDD:189968 | |||
Collagen | 413..465 | CDD:189968 | |||
Collagen | 499..561 | CDD:189968 | 6/28 (21%) | ||
Collagen | 574..632 | CDD:189968 | 11/57 (19%) | ||
Collagen | 657..714 | CDD:189968 | 24/62 (39%) | ||
Collagen | 765..824 | CDD:189968 | 18/58 (31%) | ||
Collagen | 854..911 | CDD:189968 | 19/56 (34%) | ||
Collagen | 884..943 | CDD:189968 | 24/59 (41%) | ||
Collagen | 923..982 | CDD:189968 | 28/68 (41%) | ||
Collagen | 1028..1085 | CDD:189968 | 24/56 (43%) | ||
Collagen | 1229..1287 | CDD:189968 | 28/57 (49%) | ||
Collagen | 1318..1376 | CDD:189968 | 270/813 (33%) | ||
Collagen | 1399..1458 | CDD:189968 | |||
Collagen | 1477..1534 | CDD:189968 | |||
C4 | 1555..1662 | CDD:128421 | |||
C4 | 1663..1777 | CDD:128421 | |||
CG42342 | NP_001189234.1 | DUF4763 | 130..>210 | CDD:292582 | |
Collagen | 366..413 | CDD:189968 | 28/96 (29%) | ||
Collagen | 660..718 | CDD:189968 | 32/79 (41%) | ||
Collagen | 690..748 | CDD:189968 | 30/60 (50%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | P | PTHR24023 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
2 | 2.010 |