Sequence 1: | NP_723044.1 | Gene: | Col4a1 / 33727 | FlyBaseID: | FBgn0000299 | Length: | 1779 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_005162870.1 | Gene: | col11a1a / 565402 | ZFINID: | ZDB-GENE-070209-167 | Length: | 1814 | Species: | Danio rerio |
Alignment Length: | 1705 | Identity: | 618/1705 - (36%) |
---|---|---|---|
Similarity: | 755/1705 - (44%) | Gaps: | 428/1705 - (25%) |
- Green bases have known domain annotations that are detailed below.
Fly 29 AGTAGSIQDSVKHYNRNEPKFPIDDSYDI--VDSAGVAR-----------GDLPPKNCTAGYAGC 80
Fly 81 V-PKCIAE----KGNRGLPGPLGPTGLKGEMGF--PGM--EGPSGDKGQKGDPGPYGQRGDKGER 136
Fly 137 GSPGLHGQAGVPGVQGPAGNPGAPGINGKDGCDGQDGIPGLEGLSGMPGPRGYAGQL----GSKG 197
Fly 198 EKGEPAKENGDYAK--------GEKGEPGWRGTAGLAGPQGFPGEKGERGDSGPYGAKGPRGEHG 254
Fly 255 LKGEKGASCYGPMKPGAPGIKGEKGEPASSFPVKPTHTVMGPRGDMGQKGEPGLVGRKGEPGPEG 319
Fly 320 DTGLDGQKGEKGLPGGPGDRGRQGN---FGPPGSTGQKGDRGEPGLNGLPGNPGQKGEPGRAGAT 381
Fly 382 GKPGLLGPPGPPGGGRGTPGPPGPKGPRGYVGAPGPQGLNGVDGLPGPQGYNGQKGGAGLPGRPG 446
Fly 447 NEGPPGKKGEKGTAGLNGPKGSIGPIGHPGPPGPEGQKGDAGLPGYGIQGSKGDAGIPGYPGLKG 511
Fly 512 SKGERGFKGNAGAPGDSKLGRPGTPGAAGAPGQKGDAGRPGTPGQKGDMGIKGDVGGKCSSCRAG 576
Fly 577 PKGDKGTSGLPGIPGKDGARGPPGERGYPGERGHDGINGQTGPPGEKGEDGRTGLPGATGEPGKP 641
Fly 642 ALCDLSLIEPLKGDKGYPGAPGAKGVQGFKGAEGLPGIPGPKGEFGFKGEKGLSGAPGNDGTPGR 706
Fly 707 AGRDGYPGIPGQSIKGEPGFHGRDGAKGDKGSFGRSGEKGEPGSCALDEIKMPAKGNKGEPGQTG 771
Fly 772 MPGPPGEDGSPGERGYTGLKGNTGPQGPPGVEGPRGLNGPRGEKGNQGAVGVPGNPGKDGLRGIP 836
Fly 837 GRNGQPGPRGEPG-ISRPGPMGPPGLNGLQGEKGDRGPTGPIGFPGAD------GSVGYPGDRGD 894
Fly 895 AGLPGVSGRPGIVGEKGDVGPIGPAGVAGPPGVPGIDGVRGRDGAKGEPGSPGLVGMPGNKGDRG 959
Fly 960 APGNDGPKGFAGVTGAPGKRGPAGIPGVSGAKGDKGATGLTGNDGPVGGRGPPGAPGLMGIKGDQ 1024
Fly 1025 GLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGLPGDASEKGQKGEPGPSGLRGDTGPAGTPGWPGE 1089
Fly 1090 KGLPGLAVHGRAGPPGEKGDQGRSGIDGRDGINGEKGEQGLQGVWGQPGEKGSVGAPGIPGAPGM 1154
Fly 1155 DGLPGAAGAPGAVGYPGDRGDKGEPGLSGLPGLKGETGPVGLQGFTGAPGPKGERGIRGQPGLPA 1219
Fly 1220 TVPDIRGDKGSQGERGYTGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDIGP 1284
Fly 1285 RGEIGYPGVTIKGEKGLPGRPGRNGRQGLIGAPGLIGERGLPGLAGEPGLVGLPGPIGPAGSKGE 1349
Fly 1350 RGLAGSPGQPGQDGFPGAPGLKGDTGPQGFKGERGLNGF---EGQKGDKGDRGLQGPSGLPGLVG 1411
Fly 1412 QKGDTGYPGLNGNDGPVGAPGERGFTGPKGRDGRDGTPGLPGQKGEPGMLPPPGPKGEPGQPGRN 1476
Fly 1477 GPKGEPGRPGERGLIGIQGERGEKGERGLIGETGNVGRPGPKGDRGEPGERGYEGAIGLIGQKGE 1541
Fly 1542 PGAPAPAALDYLTGILITRHSQSETVPACSAGHTELWTGYSLLYVDGNDYAHNQDLGSPGSCVPR 1606
Fly 1607 FSTLPVLSCGQNNVCNYASRNDKTFWLTTNAAIPMMPVENIEIRQYISRCVVCEAPANVIAVHSQ 1671
Fly 1672 TIEVPDCPNGWEGLW 1686 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Col4a1 | NP_723044.1 | Collagen | 104..161 | CDD:189968 | 22/60 (37%) |
Collagen | 322..380 | CDD:189968 | 25/60 (42%) | ||
Collagen | 413..465 | CDD:189968 | 27/51 (53%) | ||
Collagen | 499..561 | CDD:189968 | 21/61 (34%) | ||
Collagen | 574..632 | CDD:189968 | 23/57 (40%) | ||
Collagen | 657..714 | CDD:189968 | 24/56 (43%) | ||
Collagen | 765..824 | CDD:189968 | 29/58 (50%) | ||
Collagen | 854..911 | CDD:189968 | 31/62 (50%) | ||
Collagen | 884..943 | CDD:189968 | 30/58 (52%) | ||
Collagen | 923..982 | CDD:189968 | 22/58 (38%) | ||
Collagen | 1028..1085 | CDD:189968 | 26/56 (46%) | ||
Collagen | 1229..1287 | CDD:189968 | 23/57 (40%) | ||
Collagen | 1318..1376 | CDD:189968 | 23/57 (40%) | ||
Collagen | 1399..1458 | CDD:189968 | 27/58 (47%) | ||
Collagen | 1477..1534 | CDD:189968 | 10/56 (18%) | ||
C4 | 1555..1662 | CDD:128421 | 13/106 (12%) | ||
C4 | 1663..1777 | CDD:128421 | 7/24 (29%) | ||
col11a1a | XP_005162870.1 | TSPN | 43..233 | CDD:214560 | |
Collagen | 571..630 | CDD:189968 | 25/99 (25%) | ||
Collagen | 722..778 | CDD:189968 | 28/60 (47%) | ||
Collagen | 814..873 | CDD:189968 | 29/76 (38%) | ||
Collagen | 862..915 | CDD:189968 | 21/52 (40%) | ||
Collagen | <1383..1425 | CDD:189968 | 20/58 (34%) | ||
COLFI | 1586..1812 | CDD:279718 | 23/159 (14%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E33208_3BAFZ | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |