DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Col4a1 and col11a2

DIOPT Version :9

Sequence 1:NP_723044.1 Gene:Col4a1 / 33727 FlyBaseID:FBgn0000299 Length:1779 Species:Drosophila melanogaster
Sequence 2:XP_005159499.1 Gene:col11a2 / 561679 ZFINID:ZDB-GENE-000208-23 Length:2021 Species:Danio rerio


Alignment Length:1802 Identity:617/1802 - (34%)
Similarity:770/1802 - (42%) Gaps:484/1802 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 KTAGTAGSIQDSVKHYNRNEPKFPIDDSYDIVDSAGVARGDLPPKNC--------TAGYAGCVPK 83
            ||.|...|          ..|:.|..:.| |....|:...|...|:.        |....|....
Zfish   561 KTGGEVAS----------QTPEEPFTEEY-ITSDFGMKEYDYSYKDYNEPIIESKTEDTLGPALS 614

  Fly    84 CIAEKGNRGLPGPLGPTGLKGEMG-----FPGM--EGPSGDKGQKGDPGPYGQRGDKGERGSPGL 141
            .:.|:|...:      ..:|||.|     .|||  |||.|.:|..|.|||.|.:|..|..|.||.
Zfish   615 AVTEEGGASV------RAIKGEKGEPAVLEPGMLIEGPPGPEGPAGLPGPSGPQGQPGSVGDPGE 673

  Fly   142 HGQAGVPGVQGPAGNPGAPGIN-----------GKDG--CDGQD---------------GIPGLE 178
            .|..|..|:.|..|.||.||.:           |:.|  ...|:               |..|..
Zfish   674 RGPTGKAGLPGADGVPGPPGTSVMLPFRFGQSAGEKGPVASAQEAQAQAILSQARLALKGPSGPM 738

  Fly   179 GLSGMPGPRGYAGQLGSKGEKGEPAKENGDYAKGEKGEPGWRGTAGLAGPQGFPGEKGERGDSGP 243
            |.:|.|||.|..|..|.|||:|:|            |..|.||..|::||   ||:.|.||.:|.
Zfish   739 GFTGRPGPLGTPGSPGFKGERGDP------------GAQGPRGPQGVSGP---PGKAGRRGRAGA 788

  Fly   244 YGAKGPRGEHGLKGEKGASCYGPMKPGAPGIKGEKGEPASSFPVKPTHTVMGPRGDMGQKGEPGL 308
            .||:|..||.|:||::|....    ||.||.||.:|:|....|       .||.|:.|::|:.|.
Zfish   789 DGARGMPGESGIKGDRGFDGL----PGLPGDKGYRGQPGGMGP-------PGPHGEDGERGDDGD 842

  Fly   309 VGRKGEPGPEGDTGLDGQKGEKGLPGGPGDRGRQGNFGPPGSTGQKGDRGEPGLNGLPGNPGQKG 373
            ||.:|.||..|..||.|.||..||||.||.||..|..||.|:.|.:|:.|.||..|.||.   :|
Zfish   843 VGPRGLPGEPGPRGLLGPKGPSGLPGPPGVRGNDGPHGPKGNLGPQGEPGPPGQQGAPGT---QG 904

  Fly   374 EPGRAGATGKPGLLGPPGPPGGGRGTPGPPGPKGPRGYVGAPGPQGLNGVDGLPGPQGYNGQKGG 438
            .||..||||.||..||.|.|    |.||.||..||                              
Zfish   905 MPGPQGATGPPGEKGPTGKP----GLPGMPGADGP------------------------------ 935

  Fly   439 AGLPGRPGNEGPPGKKGEKGTAGLNGPKGSIGPIGHPGPPGPEGQKGDAGLPGYGIQGSKGDAGI 503
               ||.||.|||.|.||.:|.   |||:||   ||:|||.|.:|.:|..||.|:  :|.||:.|.
Zfish   936 ---PGHPGKEGPGGTKGNQGP---NGPQGS---IGYPGPRGLKGAQGIRGLKGH--KGEKGEDGF 989

  Fly   504 PGYPGLKGSKGERGFKGNAGAPGDSKLGRPGTPGAAGAPGQKGDAGRPGTPGQKGDMGIKGDVGG 568
            ||..|..|.||||              |..|.||..|..|.:|..||.|.||:.|.:|:.|:   
Zfish   990 PGIKGDFGVKGER--------------GEVGVPGPRGEDGPEGPKGRVGPPGEIGPLGLLGE--- 1037

  Fly   569 KCSSCRAGPKGDKGTSGLPGIPGKDGARGPPGERGYPGERGHDGINGQTGPPGEKGEDGRTGLPG 633
                     ||..|..||||.||:.|.:|..|..|:||..|..|..|..|.||.:|:.|.|    
Zfish  1038 ---------KGKLGVPGLPGYPGRQGIKGSLGFPGFPGTNGEKGTRGLIGKPGPRGQRGPT---- 1089

  Fly   634 ATGEPGKPALCDLSLIEPLKGDKGYPGAPGAKGVQGFKGAEGLPGIPGPKGEFGFKGEKGLSGAP 698
                                |.:|..|..||.|..|.||..|..|.|||.||.|..|.:|.:|.|
Zfish  1090 --------------------GPRGQRGPRGATGKSGAKGGSGSDGPPGPPGERGLTGPQGANGFP 1134

  Fly   699 GNDGTPGRAGRDGYPGIPGQSIKGEPGFHGRDGAKGDKGSFGRSGEKGEPGSCALDEIKMPAKGN 763
            |..|.||..|:||.||.|||  :||.||.|:.|..|..|..|..|..||             .|.
Zfish  1135 GPKGPPGPPGKDGLPGHPGQ--RGEVGFQGKVGPPGPPGVVGPHGPSGE-------------TGQ 1184

  Fly   764 KGEPGQTGMPGPPGEDGSPGERGYTGLKGNTGPQGPPGVEGPRGLNGPRGEKGNQGAVGVPGNPG 828
            .||.|..|.||||||.|..|..|..|.||:.||.|.||.:||.||.|..||:      |:||.||
Zfish  1185 MGERGHPGPPGPPGEQGLSGSSGKEGTKGDPGPPGGPGKDGPPGLRGFPGER------GLPGTPG 1243

  Fly   829 KDGLRGIPGRNGQPGPRGEPGISRPGPMGPPGLNGLQGEKGDRGPTGPIGFPGADGSVGYPGDRG 893
            ..||:|                 ..||.||||..|..||:|..|..||:|.||.      ||.:|
Zfish  1244 SGGLKG-----------------NEGPAGPPGPAGSSGERGGAGTAGPVGPPGR------PGPQG 1285

  Fly   894 DAGLPGVSGRPGIVGEKGDVGPIGPAGVAGPPGVP---GIDGVRGRDGAKGEPGSPGLVGMPGNK 955
            .   ||.||..|:.||||.|||.|..|:.||.|:|   |..|:.|.||.|||.|.||..|..|:|
Zfish  1286 P---PGTSGEKGVPGEKGPVGPAGRDGIQGPVGLPGPAGPPGISGEDGDKGEVGEPGQKGAKGSK 1347

  Fly   956 GDRGAPGNDGPK---GFAGVTGAPGKRGPAGIPGVSGAKGDKGATGLTGNDGPVGGRGPPGAPGL 1017
            |:.|.||..||.   |..|..||.|:.||.|..|..|||||:|..|..|..||:|.:|.||    
Zfish  1348 GEHGPPGPPGPMGPVGQPGAAGADGETGPRGQQGQFGAKGDEGTRGFPGPPGPIGLQGLPG---- 1408

  Fly  1018 MGIKGDQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGLPGDASEKGQKGEPGPSGLRGDTGPAG 1082
                        ||        ||||..|..|..||||.||..         ||:|..|..||.|
Zfish  1409 ------------PG--------GEKGETGDVGPLGPPGPPGPR---------GPAGPNGADGPQG 1444

  Fly  1083 TPGWPGEKGLPGLAVHGRAGPPGEKGDQGRSGIDGRDGINGEKGEQGLQGVWGQPGEKGSVGAPG 1147
            .||        ||   |..||.||||:.|.|   |..|:.||.|:.|.:|..|:.||.|..|.||
Zfish  1445 PPG--------GL---GNPGPIGEKGEPGES---GPPGVGGEPGKLGPRGERGEKGESGQPGTPG 1495

  Fly  1148 IPGAPGMDGLPGAAGAPGAVGYPGDRGDKGEPGLSGLPGLKGETGPVGLQGFTGAPGPKGERGIR 1212
            .||..|..|..|..|.||.||:|||.|..||.|..|..|.||:.|..|.||..|:|||.||.|..
Zfish  1496 PPGGKGPTGDDGPKGNPGPVGFPGDPGPPGEVGPRGQDGAKGDRGEDGEQGEAGSPGPTGENGPP 1560

  Fly  1213 GQPGLPATVPDIRGDKGSQGERGYTGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIPG 1277
            |.||.       ||..|::|..|..|||               |:|||.|..||||.:       
Zfish  1561 GPPGK-------RGPAGTRGPEGRQGEK---------------GSKGDSGALGPPGKT------- 1596

  Fly  1278 AKGDIGPRGEIGYPGVTIKGEKGLPGRPGRNGRQGLIGAPGLIGERGLPGLAGEPGLVGLPGPIG 1342
              |.:||:|:              ||:||..|.:||   ||.:||:|.||.||..   |.|||:|
Zfish  1597 --GPVGPQGQ--------------PGKPGTEGLRGL---PGTVGEQGSPGAAGPK---GPPGPLG 1639

  Fly  1343 PAGSKGERGLAGSPGQPGQDGFPGAPGLKGDTGPQGFKGERGLNGFEGQKGDKGDRGLQGPSGLP 1407
            |.      ||||..|.||..|..|.||:.|..||            .|::|:|||||:.||.   
Zfish  1640 PP------GLAGLRGDPGAKGEKGHPGMLGLIGP------------AGEQGEKGDRGMPGPQ--- 1683

  Fly  1408 GLVGQKGDTGYPGLNGNDGPVGAPGERGFTGPKGRDGRDGTPGLPGQKGEPGMLPPPGPKGEPGQ 1472
            |..|.||:|   |::|..||:|..|..|..||:|..|..|..|..|.|||.|:..||||.|.||.
Zfish  1684 GSTGPKGET---GISGGTGPLGPAGPAGMPGPRGVKGAKGASGGAGPKGEKGVQGPPGPPGPPGD 1745

  Fly  1473 PGRNGPKGEPGRPGERGLIGIQGERGEKGERGL----IGETGNVGRPGPKGDRGEPGERGYE--- 1530
            ..:..|...|                :|.:|.:    |....:.......|.....|..|.|   
Zfish  1746 VIQPLPIQIP----------------KKSKRSIDASKILSEADAEAADTTGSEFLTGNEGMEEIF 1794

  Fly  1531 GAIGLIGQKGEPGAPAPAALDYLTGILITRHSQSETVPACSAGHTELWTGYSLLYVDGNDYAHNQ 1595
            |::..:.|:.|       ::.:..|   |:.|...|.........:|..|.  .::|.|.     
Zfish  1795 GSLNSLRQEIE-------SMRFPLG---TKESPGRTCQDLHLSQPDLKDGE--YWIDPNQ----- 1842

  Fly  1596 DLGSPGSCVPRFSTLPVLSCGQNN---VCNYASRNDKTFWLTTNAAIPMMPVENIEIRQYISRCV 1657
                              .|.:::   .||:.:..:...:       |...|||:::..:|.   
Zfish  1843 ------------------GCARDSFKVYCNFTAGGETCLY-------PSKAVENVKMNSWIK--- 1879

  Fly  1658 VCEAPANVIAVHSQTIEVPDCPNGWEGLWIGYSFLMHTAVG------------------------ 1698
              |.|.::.:..:            :|....|...:..|||                        
Zfish  1880 --EKPGSLFSQFA------------KGNKFSYVDSVGEAVGVVQLGFLRLLSVQARQNLTYHCQR 1930

  Fly  1699 ---------NGGGGQALQSPGSCLED--FRATPFIE-----CNGAKG 1729
                     :||..:||:..|:..|:  :..:|:|:     |:..||
Zfish  1931 SVAWTDQTTDGGYKRALRLQGANDEEISYETSPYIKALIDGCSYRKG 1977

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Col4a1NP_723044.1 Collagen 104..161 CDD:189968 28/63 (44%)
Collagen 322..380 CDD:189968 28/57 (49%)
Collagen 413..465 CDD:189968 12/51 (24%)
Collagen 499..561 CDD:189968 23/61 (38%)
Collagen 574..632 CDD:189968 24/57 (42%)
Collagen 657..714 CDD:189968 27/56 (48%)
Collagen 765..824 CDD:189968 29/58 (50%)
Collagen 854..911 CDD:189968 26/56 (46%)
Collagen 884..943 CDD:189968 28/61 (46%)
Collagen 923..982 CDD:189968 30/64 (47%)
Collagen 1028..1085 CDD:189968 21/56 (38%)
Collagen 1229..1287 CDD:189968 18/57 (32%)
Collagen 1318..1376 CDD:189968 26/57 (46%)
Collagen 1399..1458 CDD:189968 24/58 (41%)
Collagen 1477..1534 CDD:189968 10/63 (16%)
C4 1555..1662 CDD:128421 17/109 (16%)
C4 1663..1777 CDD:128421 16/107 (15%)
col11a2XP_005159499.1 TSPN 29..218 CDD:214560
Collagen 733..792 CDD:189968 29/73 (40%)
Collagen 899..956 CDD:189968 34/99 (34%)
Collagen 952..1011 CDD:189968 33/80 (41%)
Collagen 1000..1057 CDD:189968 28/82 (34%)
Collagen 1036..1095 CDD:189968 27/94 (29%)
Collagen 1666..1714 CDD:189968 25/65 (38%)
COLFI 1792..2019 CDD:279718 37/245 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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