Sequence 1: | NP_723044.1 | Gene: | Col4a1 / 33727 | FlyBaseID: | FBgn0000299 | Length: | 1779 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_005159499.1 | Gene: | col11a2 / 561679 | ZFINID: | ZDB-GENE-000208-23 | Length: | 2021 | Species: | Danio rerio |
Alignment Length: | 1802 | Identity: | 617/1802 - (34%) |
---|---|---|---|
Similarity: | 770/1802 - (42%) | Gaps: | 484/1802 - (26%) |
- Green bases have known domain annotations that are detailed below.
Fly 27 KTAGTAGSIQDSVKHYNRNEPKFPIDDSYDIVDSAGVARGDLPPKNC--------TAGYAGCVPK 83
Fly 84 CIAEKGNRGLPGPLGPTGLKGEMG-----FPGM--EGPSGDKGQKGDPGPYGQRGDKGERGSPGL 141
Fly 142 HGQAGVPGVQGPAGNPGAPGIN-----------GKDG--CDGQD---------------GIPGLE 178
Fly 179 GLSGMPGPRGYAGQLGSKGEKGEPAKENGDYAKGEKGEPGWRGTAGLAGPQGFPGEKGERGDSGP 243
Fly 244 YGAKGPRGEHGLKGEKGASCYGPMKPGAPGIKGEKGEPASSFPVKPTHTVMGPRGDMGQKGEPGL 308
Fly 309 VGRKGEPGPEGDTGLDGQKGEKGLPGGPGDRGRQGNFGPPGSTGQKGDRGEPGLNGLPGNPGQKG 373
Fly 374 EPGRAGATGKPGLLGPPGPPGGGRGTPGPPGPKGPRGYVGAPGPQGLNGVDGLPGPQGYNGQKGG 438
Fly 439 AGLPGRPGNEGPPGKKGEKGTAGLNGPKGSIGPIGHPGPPGPEGQKGDAGLPGYGIQGSKGDAGI 503
Fly 504 PGYPGLKGSKGERGFKGNAGAPGDSKLGRPGTPGAAGAPGQKGDAGRPGTPGQKGDMGIKGDVGG 568
Fly 569 KCSSCRAGPKGDKGTSGLPGIPGKDGARGPPGERGYPGERGHDGINGQTGPPGEKGEDGRTGLPG 633
Fly 634 ATGEPGKPALCDLSLIEPLKGDKGYPGAPGAKGVQGFKGAEGLPGIPGPKGEFGFKGEKGLSGAP 698
Fly 699 GNDGTPGRAGRDGYPGIPGQSIKGEPGFHGRDGAKGDKGSFGRSGEKGEPGSCALDEIKMPAKGN 763
Fly 764 KGEPGQTGMPGPPGEDGSPGERGYTGLKGNTGPQGPPGVEGPRGLNGPRGEKGNQGAVGVPGNPG 828
Fly 829 KDGLRGIPGRNGQPGPRGEPGISRPGPMGPPGLNGLQGEKGDRGPTGPIGFPGADGSVGYPGDRG 893
Fly 894 DAGLPGVSGRPGIVGEKGDVGPIGPAGVAGPPGVP---GIDGVRGRDGAKGEPGSPGLVGMPGNK 955
Fly 956 GDRGAPGNDGPK---GFAGVTGAPGKRGPAGIPGVSGAKGDKGATGLTGNDGPVGGRGPPGAPGL 1017
Fly 1018 MGIKGDQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGLPGDASEKGQKGEPGPSGLRGDTGPAG 1082
Fly 1083 TPGWPGEKGLPGLAVHGRAGPPGEKGDQGRSGIDGRDGINGEKGEQGLQGVWGQPGEKGSVGAPG 1147
Fly 1148 IPGAPGMDGLPGAAGAPGAVGYPGDRGDKGEPGLSGLPGLKGETGPVGLQGFTGAPGPKGERGIR 1212
Fly 1213 GQPGLPATVPDIRGDKGSQGERGYTGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIPG 1277
Fly 1278 AKGDIGPRGEIGYPGVTIKGEKGLPGRPGRNGRQGLIGAPGLIGERGLPGLAGEPGLVGLPGPIG 1342
Fly 1343 PAGSKGERGLAGSPGQPGQDGFPGAPGLKGDTGPQGFKGERGLNGFEGQKGDKGDRGLQGPSGLP 1407
Fly 1408 GLVGQKGDTGYPGLNGNDGPVGAPGERGFTGPKGRDGRDGTPGLPGQKGEPGMLPPPGPKGEPGQ 1472
Fly 1473 PGRNGPKGEPGRPGERGLIGIQGERGEKGERGL----IGETGNVGRPGPKGDRGEPGERGYE--- 1530
Fly 1531 GAIGLIGQKGEPGAPAPAALDYLTGILITRHSQSETVPACSAGHTELWTGYSLLYVDGNDYAHNQ 1595
Fly 1596 DLGSPGSCVPRFSTLPVLSCGQNN---VCNYASRNDKTFWLTTNAAIPMMPVENIEIRQYISRCV 1657
Fly 1658 VCEAPANVIAVHSQTIEVPDCPNGWEGLWIGYSFLMHTAVG------------------------ 1698
Fly 1699 ---------NGGGGQALQSPGSCLED--FRATPFIE-----CNGAKG 1729 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Col4a1 | NP_723044.1 | Collagen | 104..161 | CDD:189968 | 28/63 (44%) |
Collagen | 322..380 | CDD:189968 | 28/57 (49%) | ||
Collagen | 413..465 | CDD:189968 | 12/51 (24%) | ||
Collagen | 499..561 | CDD:189968 | 23/61 (38%) | ||
Collagen | 574..632 | CDD:189968 | 24/57 (42%) | ||
Collagen | 657..714 | CDD:189968 | 27/56 (48%) | ||
Collagen | 765..824 | CDD:189968 | 29/58 (50%) | ||
Collagen | 854..911 | CDD:189968 | 26/56 (46%) | ||
Collagen | 884..943 | CDD:189968 | 28/61 (46%) | ||
Collagen | 923..982 | CDD:189968 | 30/64 (47%) | ||
Collagen | 1028..1085 | CDD:189968 | 21/56 (38%) | ||
Collagen | 1229..1287 | CDD:189968 | 18/57 (32%) | ||
Collagen | 1318..1376 | CDD:189968 | 26/57 (46%) | ||
Collagen | 1399..1458 | CDD:189968 | 24/58 (41%) | ||
Collagen | 1477..1534 | CDD:189968 | 10/63 (16%) | ||
C4 | 1555..1662 | CDD:128421 | 17/109 (16%) | ||
C4 | 1663..1777 | CDD:128421 | 16/107 (15%) | ||
col11a2 | XP_005159499.1 | TSPN | 29..218 | CDD:214560 | |
Collagen | 733..792 | CDD:189968 | 29/73 (40%) | ||
Collagen | 899..956 | CDD:189968 | 34/99 (34%) | ||
Collagen | 952..1011 | CDD:189968 | 33/80 (41%) | ||
Collagen | 1000..1057 | CDD:189968 | 28/82 (34%) | ||
Collagen | 1036..1095 | CDD:189968 | 27/94 (29%) | ||
Collagen | 1666..1714 | CDD:189968 | 25/65 (38%) | ||
COLFI | 1792..2019 | CDD:279718 | 37/245 (15%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |