Sequence 1: | NP_723044.1 | Gene: | Col4a1 / 33727 | FlyBaseID: | FBgn0000299 | Length: | 1779 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001074044.1 | Gene: | col27a1b / 560145 | ZFINID: | ZDB-GENE-100119-2 | Length: | 1658 | Species: | Danio rerio |
Alignment Length: | 1618 | Identity: | 548/1618 - (33%) |
---|---|---|---|
Similarity: | 688/1618 - (42%) | Gaps: | 479/1618 - (29%) |
- Green bases have known domain annotations that are detailed below.
Fly 212 GEKGEPGWRGTAGLAGPQGFPGEKGERGDSGPYGAKGPRGEHGLKGEKGASCYGPMKPGAPGIKG 276
Fly 277 EKGEPASSFPVKPTHTVMGPRGDMGQKGEPGLVGRKGEPGPEGDTGLDGQKGEKGLPGGPGDRGR 341
Fly 342 QGNFGPPGSTGQKGDRGEPGLNGLPGNPGQKGEPGRAGATGKPGLLGPPGPPGGGRGTPGPPGPK 406
Fly 407 GPRGYVGAPGPQGLNGVDGLPGPQGYNGQKGGAGLPGRPGNEGPPGKKGEKGTAGLNGPKGSIGP 471
Fly 472 IGHPGPPGPEGQKGDAGLPGYGIQGSKGDAGIPGYPGLKGSKGERGFKGNAGAPGDSKLGRPGTP 536
Fly 537 GAAGAPGQKGDAGRPGTPGQKGDMGIKGDVGGKCSSCRAGPKGDKGTSGLPGIPGKDGARGPPGE 601
Fly 602 RGYPGERGHDGINGQTGPPGEKGEDGRTGLPGATGEPGKPALCDLSLIEPLKGDKGYPGAPGAKG 666
Fly 667 VQGFKGAEGLPGIPGPKGEFGFKGEK---GLSGAPGNDGTPGRAGRDGYPGIPGQSIKGEPGFHG 728
Fly 729 RDGAKGDKGSFGRSGEKGEPGSCALDEIKMPAKGNKGEPGQTGMPGPPGEDGSPGERGYTGLKGN 793
Fly 794 TGPQGPPGVEGPRGLNGPRGEKGNQGAVGVPGNPGKDGLRGIPGRNGQPGPRGEPGISRPGPMGP 858
Fly 859 PGLNGLQGEKGDRGPTGPIGFPGADGSVGYPGDRGDAGLPGVSGRPGIVGEKGDVGPIGPAGVAG 923
Fly 924 PPGVPGIDGVRGRDGAKGEPGSPGLVGMPGNKGDRGAPGNDGPKGFAGVTGAPGKRGPAGIPGVS 988
Fly 989 GAKGDKGATGLTGNDGPVGGRGPPGAPGLMGIKGDQGLAGAPGQQGLDGMPGEKGNQGFPGLDGP 1053
Fly 1054 PGLPGDASEKGQKGEPGPSGLRGDTGPAGTPGWPGEKGLPGLAVHGRAGPPGEKGDQGRSGIDGR 1118
Fly 1119 DGINGEKGEQGLQGVWGQPGEKGSVGAPGIPGAPGMDGLPGAAGAPGAVGYPGDRGDKGEPGLSG 1183
Fly 1184 LPGLKGETGPVGLQGFTGAPGPKGERGIRGQPGLPATVPDIRGDKGSQGERGYTGEKGEQGERGL 1248
Fly 1249 TGPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDIGPRGEIGYPGVTIKGEKGLPGRPGRNGRQGL 1313
Fly 1314 IGAPGLIGERGLPGLAGEPGLVGLPGPIGPAGSKGERGLAGSPGQPGQDGFPGAPGLKGDTGPQG 1378
Fly 1379 FKGERGLNGFEGQKGDKGDRGLQGPSGLPGLVGQKGDTGYPGLNGNDGPVGAPGERGFTGPKGRD 1443
Fly 1444 GRDGTPGLPGQKGEPGMLPPPGPKGEPGQPGRNGPKGEPGRPGERGLIGIQGERGEKGERGLIGE 1508
Fly 1509 TGNVGRPGPKGDRGEPGERGYEGAIGLIGQKGEPGAPAPAALDYLTGILITRHSQSETVPACSAG 1573
Fly 1574 HTELWTGYSLLYVDGNDYAHN---QDLGSP----GSCVPRFSTLPVLS----------------- 1614
Fly 1615 --CGQNNVCNYASRNDKTFWLTTNAAIPMMPVENIEIR-QYISRCVVCEAP-------------- 1662
Fly 1663 -----------ANVIAVHSQTIEVPDCPNGWEGLWIGYSFLMHTAVGNGGGGQALQSPGSCLEDF 1716
Fly 1717 RATP--------FIECNGAKGTC-----HFYETMTSF-----------WMYNLESSQP 1750 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Col4a1 | NP_723044.1 | Collagen | 104..161 | CDD:189968 | |
Collagen | 322..380 | CDD:189968 | 25/57 (44%) | ||
Collagen | 413..465 | CDD:189968 | 18/51 (35%) | ||
Collagen | 499..561 | CDD:189968 | 26/61 (43%) | ||
Collagen | 574..632 | CDD:189968 | 21/57 (37%) | ||
Collagen | 657..714 | CDD:189968 | 25/59 (42%) | ||
Collagen | 765..824 | CDD:189968 | 32/58 (55%) | ||
Collagen | 854..911 | CDD:189968 | 23/56 (41%) | ||
Collagen | 884..943 | CDD:189968 | 25/58 (43%) | ||
Collagen | 923..982 | CDD:189968 | 26/58 (45%) | ||
Collagen | 1028..1085 | CDD:189968 | 20/56 (36%) | ||
Collagen | 1229..1287 | CDD:189968 | 25/57 (44%) | ||
Collagen | 1318..1376 | CDD:189968 | 26/57 (46%) | ||
Collagen | 1399..1458 | CDD:189968 | 18/58 (31%) | ||
Collagen | 1477..1534 | CDD:189968 | 26/56 (46%) | ||
C4 | 1555..1662 | CDD:128421 | 28/133 (21%) | ||
C4 | 1663..1777 | CDD:128421 | 21/112 (19%) | ||
col27a1b | NP_001074044.1 | LamG | 42..214 | CDD:304605 | |
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 308..332 | ||||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 345..364 | ||||
Triple-helical region | 424..1417 | 498/1358 (37%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 427..550 | 69/191 (36%) | |||
Collagen | 493..551 | CDD:189968 | 33/97 (34%) | ||
Collagen | 523..581 | CDD:189968 | 31/73 (42%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 571..614 | 21/74 (28%) | |||
Collagen | 631..689 | CDD:189968 | 31/77 (40%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 637..1332 | 342/925 (37%) | |||
Collagen | 679..730 | CDD:189968 | 28/89 (31%) | ||
Collagen | 760..819 | CDD:189968 | 29/70 (41%) | ||
Collagen | 811..869 | CDD:189968 | 31/57 (54%) | ||
Collagen | 874..932 | CDD:189968 | 25/71 (35%) | ||
Collagen | 913..969 | CDD:189968 | 26/61 (43%) | ||
Collagen | 946..1004 | CDD:189968 | 29/63 (46%) | ||
Collagen | 985..1044 | CDD:189968 | 28/70 (40%) | ||
Collagen | 1081..1137 | CDD:189968 | 24/57 (42%) | ||
Collagen | 1139..1196 | CDD:189968 | 33/84 (39%) | ||
Collagen | 1178..1235 | CDD:189968 | 27/67 (40%) | ||
Collagen | 1226..1283 | CDD:189968 | 27/59 (46%) | ||
Collagen | 1262..1327 | CDD:189968 | 32/82 (39%) | ||
Collagen | 1316..1375 | CDD:189968 | 27/79 (34%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1377..1415 | 19/40 (48%) | |||
COLFI | 1459..1657 | CDD:295304 | 39/217 (18%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |