DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Col4a1 and col7a1l

DIOPT Version :9

Sequence 1:NP_723044.1 Gene:Col4a1 / 33727 FlyBaseID:FBgn0000299 Length:1779 Species:Drosophila melanogaster
Sequence 2:XP_009298585.1 Gene:col7a1l / 559516 ZFINID:ZDB-GENE-030131-9861 Length:2161 Species:Danio rerio


Alignment Length:998 Identity:363/998 - (36%)
Similarity:451/998 - (45%) Gaps:286/998 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   172 DGIPGLEGLSGMPGPRGYAGQLGSKGEKGEPAKENGDYAKGE--KGEPGWRGTAGLAGPQG---- 230
            |.:|.:|        |.:.|.:.|:..:.| .|::.:.|:.:  ..:|     ..||.|:|    
Zfish  1119 DDLPSIE--------REFIGSICSEALQSE-FKQHDESAQLDTPTEDP-----EALAKPEGPCPL 1169

  Fly   231 -FPGEKGERGDSGPYGAKGPRGEHGLKGEKGASCYGPMKPGAPG--------IKGEKGEPASSFP 286
             ..|:|||:||...:|        ||:.::|           ||        :||||||      
Zfish  1170 NCKGQKGEKGDGFGHG--------GLRLQQG-----------PGHFDSFSLKVKGEKGE------ 1209

  Fly   287 VKPTHTVMGPRGDMGQKGEPGLVGRKGEPGPEGDTGLDGQKGEKGLPGGPGDRGRQGNFGPPGST 351
                      ||..|..|.|||.||.|..||.|.   .||:|..|:   |||.|..||.||   .
Zfish  1210 ----------RGLPGTDGIPGLPGRPGRTGPPGS---PGQRGPSGI---PGDMGPPGNTGP---K 1255

  Fly   352 GQKGDRGEPG--LNGLPGNPGQKGEPGRAGATGKPGLLGPPGPPGGGRGTPGPPGPKGP-----R 409
            ||:|:|||||  :.|:...||:|||||.:|.:|.||:.|..|||    |.||.|||.|.     :
Zfish  1256 GQRGERGEPGYVMGGMEVLPGRKGEPGSSGPSGAPGVPGVSGPP----GLPGLPGPSGSPGLSIK 1316

  Fly   410 GYVGAPGPQGLNGVDGLPGPQGYNGQKGGAGLPGRPGNEGPPGKKGEKGTAGLNGPKGSIGPIGH 474
            |..|.|||:|..|..|..|.:|..|..|..||||..|.:|.||..|:||..|.:|    ||..|.
Zfish  1317 GESGEPGPKGPRGKPGQKGEKGEQGNNGLPGLPGPVGVDGLPGLAGQKGEKGQDG----IGTQGA 1377

  Fly   475 PGPPGPEGQKGDAGLPGYGIQGSKGDAGIPGYPGLKGSKGERGFKGNAGAPGDSKLGRPGTPGAA 539
            .|||||.|:||:.||     .||||:.||.|..|:.|.:|::|.||:              .|..
Zfish  1378 QGPPGPPGEKGNTGL-----SGSKGEVGIQGLQGIAGPRGKKGLKGD--------------QGEK 1423

  Fly   540 GAPGQKGDAGRPGTPGQKGDMGIKGDVGGKCSSCRAGPKGDKGTSGLPGIPGKDGARGPPGERGY 604
            ||.|:.|..|.||..|..|               .||.|||:|..|.||.|.| |..||||::  
Zfish  1424 GAQGENGPIGSPGIAGFPG---------------AAGRKGDEGQRGAPGEPAK-GILGPPGKK-- 1470

  Fly   605 PGERGHDGINGQTGPPGEKGEDGRTGLPGATGEPGKPALCDLSLIEPLKGDKGYPGAPGAKGVQG 669
             |.||..|:.|..||.|.||:                           :||||..|.||.     
Zfish  1471 -GARGDIGLVGPPGPQGIKGD---------------------------RGDKGEKGNPGF----- 1502

  Fly   670 FKGAEGLPGIPGPKGEFGFKGEKGLSGAPGNDGTPGRAGRDGYPGIPGQSIKGEPGFHGRDGAKG 734
                 |:||.||||||.|.:|..|||                          |:||..|.||:||
Zfish  1503 -----GIPGQPGPKGESGERGNVGLS--------------------------GKPGPKGNDGSKG 1536

  Fly   735 DKGSFGRSGEKGEPGSCALDEIKMPAKGNKGEPGQTGMPGPPGEDGSPGERGYTGLKGNTGPQGP 799
            |||..|.                         ||.:|.||..|:||.|      ||||:||.:|.
Zfish  1537 DKGEIGL-------------------------PGTSGSPGLRGKDGVP------GLKGDTGSRGE 1570

  Fly   800 PGVEGPRGLNGPRGEKGNQGAVGVPGNPGKDGLRGIPGRNGQPGPRGEPGISRPGPMGPPGLNGL 864
            |         |.|||         ||:.|..|..|:|||.|.||.:||||  :.|..||.|..||
Zfish  1571 P---------GSRGE---------PGDRGVKGPLGLPGRPGDPGDKGEPG--KLGLPGPEGHKGL 1615

  Fly   865 QGEKGDRGPTGPIGFPGADGSVGYPGDRGDAGLPGVSGRPGIVGEKGDVGPIGPAGVAGPPGVPG 929
            :||.|..||.|...|..:|.:|   ..|...|.||.||.||..||.|..||.||.|..||||...
Zfish  1616 KGEPGLPGPPGVTQFTTSDNTV---LTRAIKGEPGESGLPGPPGETGRPGPPGPEGKPGPPGNSL 1677

  Fly   930 IDGVRGRDGAKGEPGSPGLVGMPGNKGDRGAPGNDGPKGFAGVTGAPGKRGPAGIPGVSGAKGDK 994
            .....|:||..|.||.||..|..|.||:.|:.|..|..|.||:||.||..|..|.|||.|.:   
Zfish  1678 FGSSTGKDGLDGLPGIPGSKGEAGQKGEPGSKGEKGDHGRAGITGMPGLPGTPGKPGVDGKR--- 1739

  Fly   995 GATGLTGNDGPVGGRGPPGAPGLMGIKGDQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGL--P 1057
               |::|.||.   |||         |||:|..|..|:.|.:|..|:||.||.|||.|||.:  .
Zfish  1740 ---GVSGKDGE---RGP---------KGDEGEKGVKGEPGANGNEGQKGEQGSPGLPGPPIVLQE 1789

  Fly  1058 GDASEKGQKGEPGPSGLRGDTGPAGTPGWPGEKGLPGLAVHGRAGPPGEKGDQGRSG--IDGRDG 1120
            |.:.|..:|..|.|.|..|.|||   ||..||||..||        .|||||.|..|  ::.:| 
Zfish  1790 GMSIEDMKKAFPLPMGPPGATGP---PGMKGEKGEMGL--------KGEKGDAGAPGRAVEMKD- 1842

  Fly  1121 INGEKGEQGLQGVWGQPGEKGSV 1143
                     ::|::...|.|.|:
Zfish  1843 ---------IEGLFDSYGIKLSL 1856

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Col4a1NP_723044.1 Collagen 104..161 CDD:189968
Collagen 322..380 CDD:189968 28/59 (47%)
Collagen 413..465 CDD:189968 23/51 (45%)
Collagen 499..561 CDD:189968 20/61 (33%)
Collagen 574..632 CDD:189968 26/57 (46%)
Collagen 657..714 CDD:189968 18/56 (32%)
Collagen 765..824 CDD:189968 21/58 (36%)
Collagen 854..911 CDD:189968 25/56 (45%)
Collagen 884..943 CDD:189968 25/58 (43%)
Collagen 923..982 CDD:189968 27/58 (47%)
Collagen 1028..1085 CDD:189968 25/58 (43%)
Collagen 1229..1287 CDD:189968
Collagen 1318..1376 CDD:189968
Collagen 1399..1458 CDD:189968
Collagen 1477..1534 CDD:189968
C4 1555..1662 CDD:128421
C4 1663..1777 CDD:128421
col7a1lXP_009298585.1 vWFA 33..198 CDD:294047
FN3 236..327 CDD:238020
fn3 330..410 CDD:278470
fn3 422..487 CDD:278470
fn3 509..581 CDD:278470
fn3 604..678 CDD:278470
FN3 698..781 CDD:238020
fn3 785..862 CDD:278470
vWFA 954..1118 CDD:294047
Collagen 1208..1265 CDD:189968 33/81 (41%)
Collagen 1316..1371 CDD:189968 24/54 (44%)
Collagen 1403..1459 CDD:189968 26/84 (31%)
Collagen 1439..1500 CDD:189968 33/106 (31%)
Collagen 1503..1560 CDD:189968 35/113 (31%)
Collagen 1542..1601 CDD:189968 34/107 (32%)
Collagen 1683..1739 CDD:189968 28/55 (51%)
Collagen 1722..1784 CDD:189968 33/79 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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