Sequence 1: | NP_723044.1 | Gene: | Col4a1 / 33727 | FlyBaseID: | FBgn0000299 | Length: | 1779 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001077296.1 | Gene: | col10a1a / 558919 | ZFINID: | ZDB-GENE-030131-8373 | Length: | 655 | Species: | Danio rerio |
Alignment Length: | 656 | Identity: | 256/656 - (39%) |
---|---|---|---|
Similarity: | 302/656 - (46%) | Gaps: | 191/656 - (29%) |
- Green bases have known domain annotations that are detailed below.
Fly 382 GKPGLLGPPGPPGGGRGTPGPPGPKGPRGYVGAPGPQGLNGVDGLPGPQGYN--GQKGGAGLPGR 444
Fly 445 PGNEGPPGKKGEKGTAGLNGPKGSIGPIGHPGPPG--PEGQKGDAGLPGYGIQGSKGDAGIPGYP 507
Fly 508 GLKGSKGERGFKGNAGAPGDSKLGRPGTPGAAGAPGQKGDAGRPGTPGQKGDMGIKGDVGGKCSS 572
Fly 573 CRAGPKGDKGTSGLPGIPGKDGARGPPGERGYPGERGHDGINGQTGPPGEKGEDGRTGLPGATGE 637
Fly 638 PGKPALCDLSLIEPLKGDKGYPGAPGAKGVQGFKGAEGLPGIPGPKGEFGFKGEKGLSGAPGNDG 702
Fly 703 TPGRAGRDGYPGIPGQSIKGEPGFHGRDGAKGDKGSFGRSGEKGEPGSCALDEIKMPAKGNKGEP 767
Fly 768 GQTGMPGPPGEDGS---PGERGYTGLKGNTGPQGPPGVEGPRGLNGPRGEKGNQGAVGVPGNPGK 829
Fly 830 DGLRGIPGRNGQPGPRGEPGISRPGPMGPPGLNGLQGEKGDRGPTGPIGFPGADGSVGYPGDRGD 894
Fly 895 AGLPGVSGRPGIVGEKGDVGPIGPAGVAGPPGVPGIDGVRGRDGAKGEPGSPGLVGMPGNKGDRG 959
Fly 960 APGNDGPKGFAGVTGAPGKRGPAGIPGVSGAKGDKGATGLTGNDGPVGGRGPPGAPGLMGIKGDQ 1024
Fly 1025 GLAGAP 1030 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Col4a1 | NP_723044.1 | Collagen | 104..161 | CDD:189968 | |
Collagen | 322..380 | CDD:189968 | |||
Collagen | 413..465 | CDD:189968 | 27/53 (51%) | ||
Collagen | 499..561 | CDD:189968 | 18/61 (30%) | ||
Collagen | 574..632 | CDD:189968 | 26/57 (46%) | ||
Collagen | 657..714 | CDD:189968 | 16/56 (29%) | ||
Collagen | 765..824 | CDD:189968 | 29/61 (48%) | ||
Collagen | 854..911 | CDD:189968 | 22/56 (39%) | ||
Collagen | 884..943 | CDD:189968 | 24/58 (41%) | ||
Collagen | 923..982 | CDD:189968 | 21/58 (36%) | ||
Collagen | 1028..1085 | CDD:189968 | 1/3 (33%) | ||
Collagen | 1229..1287 | CDD:189968 | |||
Collagen | 1318..1376 | CDD:189968 | |||
Collagen | 1399..1458 | CDD:189968 | |||
Collagen | 1477..1534 | CDD:189968 | |||
C4 | 1555..1662 | CDD:128421 | |||
C4 | 1663..1777 | CDD:128421 | |||
col10a1a | NP_001077296.1 | Collagen | <114..160 | CDD:189968 | 23/62 (37%) |
Collagen | 156..219 | CDD:189968 | 34/93 (37%) | ||
Collagen | 226..284 | CDD:189968 | 34/103 (33%) | ||
Collagen | 287..346 | CDD:189968 | 31/68 (46%) | ||
Collagen | 371..429 | CDD:189968 | 30/80 (38%) | ||
C1Q | 524..652 | CDD:128420 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |