DRSC/TRiP Functional Genomics Resources

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Protein Alignment Col4a1 and col11a1b

DIOPT Version :9

Sequence 1:NP_723044.1 Gene:Col4a1 / 33727 FlyBaseID:FBgn0000299 Length:1779 Species:Drosophila melanogaster
Sequence 2:NP_001171883.1 Gene:col11a1b / 555202 ZFINID:ZDB-GENE-070912-607 Length:1815 Species:Danio rerio


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Col4a1NP_723044.1 Collagen 104..161 CDD:189968
Collagen 322..380 CDD:189968
Collagen 413..465 CDD:189968
Collagen 499..561 CDD:189968
Collagen 574..632 CDD:189968
Collagen 657..714 CDD:189968
Collagen 765..824 CDD:189968
Collagen 854..911 CDD:189968
Collagen 884..943 CDD:189968
Collagen 923..982 CDD:189968
Collagen 1028..1085 CDD:189968
Collagen 1229..1287 CDD:189968
Collagen 1318..1376 CDD:189968
Collagen 1399..1458 CDD:189968
Collagen 1477..1534 CDD:189968
C4 1555..1662 CDD:128421
C4 1663..1777 CDD:128421
col11a1bNP_001171883.1 TSPN 43..233 CDD:214560
Collagen 571..629 CDD:189968
Collagen 628..686 CDD:189968
Collagen 724..778 CDD:189968
Collagen 814..873 CDD:189968
Collagen 850..924 CDD:189968
Collagen 1168..1220 CDD:189968
COLFI 1587..1813 CDD:279718
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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