Sequence 1: | NP_723044.1 | Gene: | Col4a1 / 33727 | FlyBaseID: | FBgn0000299 | Length: | 1779 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_009290110.1 | Gene: | col4a4 / 554270 | ZFINID: | ZDB-GENE-101001-1 | Length: | 1670 | Species: | Danio rerio |
Alignment Length: | 1884 | Identity: | 753/1884 - (39%) |
---|---|---|---|
Similarity: | 928/1884 - (49%) | Gaps: | 341/1884 - (18%) |
- Green bases have known domain annotations that are detailed below.
Fly 4 FWKRLLYAAVIAGALVGADAQFWKTAGTAGSIQDSVKHYNRNEPKFPIDDSYDIVDSAGVARGDL 68
Fly 69 PPKNCTAGYAGCVPKCIAEKGNRGLPGPLGPTGLKGEMGFPGMEGPSGDKGQKGDPGPYGQRGDK 133
Fly 134 GERGSPGLHGQAGVPGVQGPAGNPGAPGINGKDGCDGQDGIPGLEGLSGMPGPRGYAGQLGSKGE 198
Fly 199 KGEPAKENGDYAKGEKGEPGWRGTAGLAGPQGFPGEKGERGDSGPYGAKGPRGEHGLKGEKGASC 263
Fly 264 YGPMKPGAPG--IKGEKGEPASSFPVKPTHTVMGPRGDMGQKGEPG------------LVGRKGE 314
Fly 315 PGPEGDTGLDGQ---------KGEKGLPGGPGDRGRQGNFGPPGSTGQKGDRGEPGLNGLPGNPG 370
Fly 371 QK---GEPGRAGATGKP--------GLLGPPGPPGGGRGTPGPPGPKGPRGYVGAPGPQGLNGVD 424
Fly 425 GLPGPQGYNGQKGGAGLPGRPGNEGPPGKKGEKGTAG-LNGPKGSIGPIGHPGPPGPEGQKGDAG 488
Fly 489 LPGY-------GIQGSKGDAGIPGYPGLKGSKGERGFKGNA-GAPGDSKLGRPGTPGAAGAPGQK 545
Fly 546 GDAGRPGTPGQKGDMGIKGDVGGKCSSCRAGPKGDKGTSGLPGIPGKDGARGPPGERGYPGE--- 607
Fly 608 ---RGHDGINGQTGPPGEKGEDGRTGLPGATGEPGKPALCDLSLIEPLKGDKGYPGAPGAKGVQG 669
Fly 670 FKGAEG--LPGIPGPKGEFGFKGEKGLSGAPGNDGTPGRAGRDGYPGIPGQSIKGEPGFHGRDGA 732
Fly 733 KGDKGSFGRSGEKGEPGSCALDEIKMPAKGNKGEPGQTGMPGPPGEDGSPGERGYTGLKGNTGPQ 797
Fly 798 GPPGVEGPRGLNGPRGEKGNQGAVGVPGNPGKDGLRGIPGRNGQPGPRGEPGISRPGPMGPPGLN 862
Fly 863 GLQGEKGDRGPTGPIGFPGADGSVGYP---GDRGDAGLPGVSGRPGIVGEKGDVGPIGPAGVAGP 924
Fly 925 PGVPGIDGVRGRDGAKGEPGSPGLVGMPGNKGDRGAPGNDGPKGFAGVTGAPGKRGPAGIPGVSG 989
Fly 990 AK---GDKGATGLTGNDGPVGGRGPPGAPGLMGIKGDQGLAGAPGQQGLDGMPGEKGNQGFPGLD 1051
Fly 1052 GPPGLPGDA---SEKGQKGEPGPSGL---------RGDTGPAGTPGWPGEKGLPGLAVHGRAGPP 1104
Fly 1105 GEKGDQGRSGIDGRDGINGEKGEQGLQGVWGQPGEKGSVGAPGIPGAPGMDGLPGAAG------- 1162
Fly 1163 APGAVGYPGDRGDKGEPGLSGLPGLKGETGPVGLQGFTGAPGPKGERGIRGQPGLPATVPDIRGD 1227
Fly 1228 KGSQGERGYTGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDIGPRGEIGYPG 1292
Fly 1293 VTIKGEKGLPGRPGRNGRQGLIGAPGLIGERGLPGLAGEPGLVGLPGPIGPAGSKGER------G 1351
Fly 1352 LAGSPGQPGQDGFPGAPGLKGD----------------TGPQGFKGERGLN------GFEGQKGD 1394
Fly 1395 KGDRGLQGPSGLPGLVGQKGDTGYPGLNGNDGPVGAPGERGFTGPKGRDGRDGTPGLPGQKGEPG 1459
Fly 1460 MLPPP-GPKGEPGQPGRNGPKGEPGRPGERGLIGIQGERGEKGERGLIGETGNVGRPGPKGDRGE 1523
Fly 1524 PGER---GYEGAIGLIGQKGEPGAPAPAALDYLTGILITRHSQSETVPACSAGHTELWTGYSLLY 1585
Fly 1586 VDGNDYAHNQDLGSPGSCVPRFSTLPVLSCGQNNVCNYASRNDKTFWLTTNAAIPMMPVENIEIR 1650
Fly 1651 QYISRCVVCEAPANVIAVHSQTIEVPDCPNGWEGLWIGYSFLMHTAVGNGGGGQALQSPGSCLED 1715
Fly 1716 FRATPFIECNGAKGTCHFYETMTSFWMYNLESSQPFERPQQQTIKAGERQSH--VSRCQVCMKN 1777 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Col4a1 | NP_723044.1 | Collagen | 104..161 | CDD:189968 | 26/56 (46%) |
Collagen | 322..380 | CDD:189968 | 31/69 (45%) | ||
Collagen | 413..465 | CDD:189968 | 20/52 (38%) | ||
Collagen | 499..561 | CDD:189968 | 28/62 (45%) | ||
Collagen | 574..632 | CDD:189968 | 19/63 (30%) | ||
Collagen | 657..714 | CDD:189968 | 23/58 (40%) | ||
Collagen | 765..824 | CDD:189968 | 23/58 (40%) | ||
Collagen | 854..911 | CDD:189968 | 32/59 (54%) | ||
Collagen | 884..943 | CDD:189968 | 26/61 (43%) | ||
Collagen | 923..982 | CDD:189968 | 25/58 (43%) | ||
Collagen | 1028..1085 | CDD:189968 | 27/68 (40%) | ||
Collagen | 1229..1287 | CDD:189968 | 23/57 (40%) | ||
Collagen | 1318..1376 | CDD:189968 | 29/79 (37%) | ||
Collagen | 1399..1458 | CDD:189968 | 24/58 (41%) | ||
Collagen | 1477..1534 | CDD:189968 | 25/59 (42%) | ||
C4 | 1555..1662 | CDD:128421 | 62/106 (58%) | ||
C4 | 1663..1777 | CDD:128421 | 52/115 (45%) | ||
col4a4 | XP_009290110.1 | Collagen | 259..316 | CDD:189968 | 26/59 (44%) |
Collagen | 850..909 | CDD:189968 | 25/58 (43%) | ||
Collagen | 998..1056 | CDD:189968 | 23/63 (37%) | ||
Collagen | 1377..1436 | CDD:189968 | 25/58 (43%) | ||
C4 | 1446..1549 | CDD:279721 | 59/103 (57%) | ||
C4 | 1555..1664 | CDD:279721 | 50/110 (45%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E33208_3BAFZ | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D41315at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100768 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.720 |