Sequence 1: | NP_723044.1 | Gene: | Col4a1 / 33727 | FlyBaseID: | FBgn0000299 | Length: | 1779 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_058615.1 | Gene: | Col5a3 / 53867 | MGIID: | 1858212 | Length: | 1739 | Species: | Mus musculus |
Alignment Length: | 1422 | Identity: | 568/1422 - (39%) |
---|---|---|---|
Similarity: | 665/1422 - (46%) | Gaps: | 308/1422 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 87 EKGNRGLPGP-LGPTGLKGEMG-------FPGMEGPSGDKGQKGDPGPYGQRGDKGERGSPGLHG 143
Fly 144 QAGVPGVQGPAGNPGAPGINGKDGCDGQDGIPGLEGLSGMPG-----PRGYAGQLGSKGEKGEPA 203
Fly 204 KENGDYAK--------GEKGEPGWRGTAGLAGP---QGFPGEKGERGDSGPYGAKGPRGEHGLKG 257
Fly 258 EKGASCYGPMKPGAPGIKGEKGEPASSFPVKPTHTVMGPRGDMGQKGEPGLVGRKGEPGPEGDTG 322
Fly 323 LDGQKGEKGLPGGPGDRGRQGNFGPPGSTGQKGDRGEPGLNGLPGNPGQKGEPGRAGATGKPGLL 387
Fly 388 GPPGPPGGGRGTPGPPGPKGPRGYVGAPGPQGLNGVDGLPGPQGYNGQKGGAGLPGRPGNEGPPG 452
Fly 453 KKGEKGTA---GLNGPKGSIGPIGHPGPPGPEGQKGDAGLPGYGIQGSKGDAGIPGYPGLKGSKG 514
Fly 515 ERGFKGNAGAPGDSKLGRPGTPGAAGAPGQKGDAGRPGTPGQKGDMGIKGDVGGKCSSCRAGPKG 579
Fly 580 DKGTSGLPGIPGKDGARGPPGERGYPGERGHDGINGQTGPPGEKGEDGRTGLPGATGEPGKPALC 644
Fly 645 DLSLIEPLKGDKGYPGAPGAKGVQGFKGAEGLPGIPGPKGEFGFKGEKGLSGAPGNDGTPGRAGR 709
Fly 710 DGYPGIPGQSIKGEPGFHGRDGAKGDKGSFGRSGEKGEPGSCALDEIKMPAKGNKGEPGQTGMPG 774
Fly 775 PPGEDGSPGERGYTGLKGNTGPQGPPGVEGPRGLNGPRGEKGNQGAVGVPGNPGKDGLRGIPGRN 839
Fly 840 GQPGPRGEPGISRPGPMGPPGLNGLQGEKGDRGPTGPIGFPGADGSVGYPGDRGDAGLPGVSGRP 904
Fly 905 GIVGEKGDVGPIGPAGVAGPPGVPGIDGV---RGRDGAKGEPGSPGLVGMPGNKGDRGAPGND-- 964
Fly 965 -GPKGFAGVTGAPGKRGPAGIPGVSGAKGDKGATGLTGNDGPVGGRGPPGAPGLMGIKGDQGLAG 1028
Fly 1029 APGQQGLDGMPGEKGNQGFPGLDGPPGLPGDASEKGQKGEPGPSGLRGDTGPAGTPGWPGEKGLP 1093
Fly 1094 GLAVHGRAGPPGEKGDQGRSGIDGRDGINGEKGEQGLQGVWGQPGEKGSVGAPGIPGAPGMDGLP 1158
Fly 1159 GAAGAPGAVGYPGDRGDKGEPGLSGLPGLKGETGPVGLQGFTGAPGPKGERGIRGQPGLPATVPD 1223
Fly 1224 IRGDKGSQGERGYTGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDIGPRGEI 1288
Fly 1289 GYPGVTIKGEKGLPGRPGRNGRQGLIGAPGLIGERGLPGLAGEPGLVGLPGPIGPAGSKGERGLA 1353
Fly 1354 GSPGQPGQDGFPGAPGLKGDTGPQGFKGERGLNGF---EGQKGDKGDRGLQGPSGLPGLVGQKGD 1415
Fly 1416 TGYPGLNGNDGPVGAPGERGFTGPKGRDGRDGTPGLPGQKGEPGMLPPPGPKGEPGQ 1472 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Col4a1 | NP_723044.1 | Collagen | 104..161 | CDD:189968 | 22/63 (35%) |
Collagen | 322..380 | CDD:189968 | 27/57 (47%) | ||
Collagen | 413..465 | CDD:189968 | 24/54 (44%) | ||
Collagen | 499..561 | CDD:189968 | 23/61 (38%) | ||
Collagen | 574..632 | CDD:189968 | 24/57 (42%) | ||
Collagen | 657..714 | CDD:189968 | 27/56 (48%) | ||
Collagen | 765..824 | CDD:189968 | 32/58 (55%) | ||
Collagen | 854..911 | CDD:189968 | 25/56 (45%) | ||
Collagen | 884..943 | CDD:189968 | 23/61 (38%) | ||
Collagen | 923..982 | CDD:189968 | 30/64 (47%) | ||
Collagen | 1028..1085 | CDD:189968 | 26/56 (46%) | ||
Collagen | 1229..1287 | CDD:189968 | 18/57 (32%) | ||
Collagen | 1318..1376 | CDD:189968 | 24/57 (42%) | ||
Collagen | 1399..1458 | CDD:189968 | 26/58 (45%) | ||
Collagen | 1477..1534 | CDD:189968 | |||
C4 | 1555..1662 | CDD:128421 | |||
C4 | 1663..1777 | CDD:128421 | |||
Col5a3 | NP_058615.1 | LamG | 32..211 | CDD:304605 | |
Collagen | 532..590 | CDD:189968 | 30/76 (39%) | ||
Collagen | 568..626 | CDD:189968 | 30/63 (48%) | ||
Collagen | 679..731 | CDD:189968 | 25/56 (45%) | ||
Collagen | 769..827 | CDD:189968 | 29/81 (36%) | ||
Collagen | 805..864 | CDD:189968 | 31/79 (39%) | ||
Collagen | 1003..1060 | CDD:189968 | 28/65 (43%) | ||
Collagen | 1057..1115 | CDD:189968 | 26/57 (46%) | ||
Collagen | 1087..1147 | CDD:189968 | 29/65 (45%) | ||
Collagen | 1312..1364 | CDD:189968 | 29/129 (22%) | ||
Collagen | 1393..1443 | CDD:189968 | 27/55 (49%) | ||
COLFI | 1510..1737 | CDD:279718 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |