Protein Alignment Col4a1 and col-170

DIOPT Version :10

• Sequence 1: NP_723044.1
• Gene: Col4a1 / 33727
• FlyBaseID: FBgn0000299
• Length: 1779
• Species: Drosophila melanogaster
• Sequence 2: NP_001367411.1
• Gene: col-170 / 353462
• WormBaseID: WBGene00000743
• Length: 300
• Species: Caenorhabditis elegans
• Alignment Length: 288
• Identity: 110/288 - (38%)
• Similarity: 122/288 - (42%)
• Gaps: 73/288 - (25%)

  Fly   885 SVGYPGDRGDAGLPGVSGRPGIVGEKGDVGPIGPAGV--AGPPGVPGIDGVRGRDGAKGEPGSPG 947
            |.|....|..||....    |:.|.....|.....||  |||||.||.|   |.|||.|:|
 Worm    78 SGGAVRSRRQAGYESA----GVEGNSFSQGGCCGCGVSAAGPPGAPGQD---GEDGADGQP---- 131

  Fly   948 LVGMPGNKGDRGAPGNDGPKGFAGVTGAPGKR----GPAGIPGVSGAKGDKGATGLTGNDGPVGG 1008
                       ||||||||.|.| .|.||...    .|||.||.:|..|.||..|.:|:|
 Worm   132 -----------GAPGNDGPDGPA-ATPAPAHEFCFDCPAGPPGPAGPAGPKGPNGNSGSD----- 179

  Fly  1009 RGPPGAPGLMGIKGDQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGLPGDASE-KGQKGEPGPS 1072
             |.||||      |:.|.||.|      |.||:.|..|.||..|.||.||..:| .|..|.||..
 Worm   180 -GQPGAP------GNNGNAGGP------GAPGQAGQDGHPGNAGAPGAPGKVNEVPGPAGAPGAP 231

  Fly  1073 GLRGDTGPAGTPGWPGEKGLPGLAVHGRAGPPGEKGDQGRSGIDGRDGINGEKGEQGLQGVWGQP 1137
            |..|..||||:||.||..        |..||.|..||.|.:|..|:.|.||:.|..
 Worm   232 GPDGPAGPAGSPGAPGNP--------GSQGPQGPAGDNGGAGSPGQPGANGDNGAD--------- 279

  Fly  1138 GEKGSVGAPGIPGAPGMDGLPGAAGAPG 1165
               |..||||     |.|..|....|||
 Worm   280 ---GETGAPG-----GCDHCPPPRTAPG 299

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Col4a1	NP_723044.1	gly_rich_SclB	<107..>361	CDD:468478
		gly_rich_SclB	<355..>642	CDD:468478
		gly_rich_SclB	<543..820	CDD:468478
		gly_rich_SclB	<727..>968	CDD:468478	32/84 (38%)
		gly_rich_SclB	<969..>1218	CDD:468478	77/202 (38%)
		gly_rich_SclB	<1186..>1420	CDD:468478
		gly_rich_SclB	<1321..>1547	CDD:468478
		C4	1555..1662	CDD:128421
		C4	1663..1777	CDD:128421
col-170	NP_001367411.1	Col_cuticle_N	16..68	CDD:198156
		gly_rich_SclB	<112..>286	CDD:468478	92/230 (40%)