DRSC/TRiP Functional Genomics Resources

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Protein Alignment Col4a1 and col4a5

DIOPT Version :9

Sequence 1:NP_723044.1 Gene:Col4a1 / 33727 FlyBaseID:FBgn0000299 Length:1779 Species:Drosophila melanogaster
Sequence 2:XP_021333076.1 Gene:col4a5 / 323561 ZFINID:ZDB-GENE-030131-2281 Length:1685 Species:Danio rerio


Alignment Length:1835 Identity:821/1835 - (44%)
Similarity:975/1835 - (53%) Gaps:282/1835 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 SAGVARGDLPPKNCTAGYAGC--VPKCIAE-----KGNRGLPGPLGPTGLKGEMGFPGMEGPSGD 117
            ||||.:.:      :|...||  ..||...     ||:|||||..|..|:.   ||||.|||.|.
Zfish    17 SAGVEKSE------SAACHGCGTGSKCDCSSVKGVKGDRGLPGLKGQPGVP---GFPGPEGPMGP 72

  Fly   118 KGQKGDPGPYGQRGDKGERGSPGLHGQAGVPGVQGPAGNPGAPGINGKDGCDGQ------DGIPG 176
            :|:|||.||.|..|.||.||.|||.|.:|.||:.|..|..||||..|..||:|.      .|.||
Zfish    73 RGEKGDDGPQGSIGPKGIRGPPGLPGFSGTPGIPGLPGQDGAPGPRGIPGCNGTKGERGFPGNPG 137

  Fly   177 LEGLSGMPGPRGYAGQLGSKGEKGEPAKENGDYAKGEKGEPGWRGTAGLAGPQGFPGEKGERGDS 241
            ..||.|.|||.|..||   |||.||....|   ...|.|.|            ||.|..|.|||.
Zfish   138 RSGLDGQPGPPGLIGQ---KGEPGEVIDIN---RISENGLP------------GFNGFTGRRGDP 184

  Fly   242 GPYGAKGPRGEHGLKGEKGASCYGPMKPGAPGIKGEKGEPASSFPVKPTHTVMGPRGDMGQKGEP 306
            ||.|.:||.|..|.||.:|       :||.||..|.||....:|        .||:   |:||:.
Zfish   185 GPPGLQGPIGPPGPKGFEG-------RPGPPGPPGPKGNMGLNF--------QGPK---GEKGDR 231

  Fly   307 GLVGRKGEPGPEGDTG-LDG------QKGEKGLPGGPGDRGRQGNFGPPG-STGQKGDRGEPGLN 363
            ||   ||.|||.|..| :.|      |:||||..|.|||.|..|..|||| ..||||::||||..
Zfish   232 GL---KGPPGPPGQVGEVSGSPDTVIQQGEKGDRGIPGDTGFPGPPGPPGPQGGQKGEKGEPGEA 293

  Fly   364 GLPGNPGQKGEPGRAGATGKPGLLGPPGPPG-----GGRGTPGPPGPK-------------GPRG 410
            |..|.||:.||||..|..|..|..||||.||     |.:|..|||||.             ||:|
Zfish   294 GKRGKPGKDGEPGLLGYPGDKGDQGPPGLPGRDGFRGEKGDQGPPGPPSYRGDQFTGVGGIGPKG 358

  Fly   411 YVGAPGPQGLNGVDGLPGPQGYNGQKG--GAGLPGRPGNEGPPGKKGEKGTAGLNG---PKGSIG 470
            ..|.|||.|:.|..||||.||..|.:|  |.|.||.||::|.||::||||..|..|   |    |
Zfish   359 DRGDPGPSGIKGDRGLPGIQGPPGPQGPPGIGGPGPPGSQGLPGERGEKGDEGQPGISLP----G 419

  Fly   471 PIGHPGPPGPEGQKGDAGLPGYGIQGSKGDAGIPGYPGLKGSKGERGFKGNAGAPGDSKLGRPGT 535
            |.|.|||.||:|.:|..|.||......:.:.|:||.|||   :|||||.|::             
Zfish   420 PPGRPGPTGPQGIQGPPGPPGPFNSDVECNRGLPGPPGL---QGERGFTGDS------------- 468

  Fly   536 PGAAGAPGQKGDAGRPGTPGQKGDMGIKGDVGGKCSSCRAGPKGDKGTSGLPGIPGKDGARGPPG 600
                   |||         ||||:         .|.:|.:......|..|.||.||..||   ||
Zfish   469 -------GQK---------GQKGE---------TCVNCFSNGNPVPGPQGFPGPPGSPGA---PG 505

  Fly   601 ERGYPGERGHDGINGQTGPPGEKGEDGRTGLPGATGEPGKPALCDLSL--IEPLKGDKGYPGAPG 663
            ..|..|:||:.|..|..||||..|..|..||||..|:||.    .||:  ::..|||.|:||:||
Zfish   506 ASGSKGDRGYPGGPGLMGPPGIPGPQGSPGLPGEKGDPGD----TLSVLGVKGDKGDTGFPGSPG 566

  Fly   664 AKGVQGFKGAEGLPGIPGPKGEFGFKGEKGLSGAPGNDGTPGRAGRDGYPGIPGQSIKGEPGFHG 728
            ..|::|..|.:|:||.||.:|..|. |.||..|..|..|.||..|..|.||.||...:|..|..|
Zfish   567 LPGLEGRPGRDGVPGPPGLRGPPGL-GLKGTQGPNGEPGLPGPPGDRGLPGSPGFGPQGPSGEKG 630

  Fly   729 RDGAKGDKGSFGRSGEKGEPGSCALDEIKMPAKGNKGEPGQTGMPGP---PGEDGSPGERGYTGL 790
            ..|..|..|:.|..|:|||||      :.:|..|.:|.|||.|.||.   ||:.|.||:.|:.||
Zfish   631 IQGVSGRPGAPGLPGQKGEPG------MTVPEVGERGPPGQDGDPGSQGRPGDSGPPGQPGFPGL 689

  Fly   791 KGNTGPQGPPGVEGPRGLNGPRGEKGNQGAVGVPGN---PGKDGLRGIPGRNGQPGPRGEPGISR 852
            .|:.|..|.||:    ||.||.|.||..|..|.||.   ||:.||.|:||:.|.||.:|:||...
Zfish   690 PGSKGEPGLPGI----GLPGPPGAKGFPGIAGSPGGPGIPGRPGLDGLPGQPGLPGSKGDPGYGL 750

  Fly   853 PGPMGP---PGLNGLQGEKGDRGPTGPIGFPGADGSVGYPGDRGDAGLPGVSGRPGIVGEKGDVG 914
            |||.||   ||:.|..|.|||.|..|..|.||..|..|.||.:||||.||               
Zfish   751 PGPPGPTGSPGIKGGPGPKGDSGFPGSPGQPGRPGLDGAPGPKGDAGFPG--------------- 800

  Fly   915 PIGPAGVAGPPGVP--GIDGVRGRDGAKGEPGSPGLVGMPGNKGDRGAPGNDGP--KGFAGVTGA 975
              || |..||||.|  |:.|..|..||.|..||||:.|..|.|||||.||...|  :|..|::|.
Zfish   801 --GP-GPRGPPGAPAFGLQGPPGPPGAPGSIGSPGVPGANGEKGDRGPPGLSTPGFQGDRGISGL 862

  Fly   976 PGKRGPAGIPGVSGAKGDKGATGLTGNDGPVGGRGP---------PGAPGLMGIKGDQGLAGAPG 1031
            ||..||.|.|||.|..|..|..||.|:.|.:|..||         |||||..|.|||.|:   ||
Zfish   863 PGPPGPVGPPGVPGRPGQDGLPGLPGSKGEMGSMGPPGSKGNPGNPGAPGFPGPKGDDGV---PG 924

  Fly  1032 QQGLDGMPGEKGNQGFPGLDGPPGLPGDASE-KGQKGE------PGPSGLRGDTGPAGTPGWPGE 1089
            |.|..|.||.||::|..|:.||||:....|. ||||||      .||.|.:|.||.:|.||.||:
Zfish   925 QSGNPGFPGLKGDKGETGIQGPPGITTSTSVLKGQKGESGVPGFSGPPGPKGITGISGDPGLPGQ 989

  Fly  1090 KGLPGLAVHGRAGPPGEKGDQGRSGIDGRDGINGEK---GEQGLQGVWGQPGEKGSVGAPGIPGA 1151
            .|.|||     .||||.|||.|..||.|..|..|.|   ||.||.||.|..|..|..|.||.||:
Zfish   990 DGRPGL-----PGPPGPKGDAGLPGIPGSPGATGLKGAMGEMGLPGVPGVKGNSGQPGQPGQPGS 1049

  Fly  1152 PGMDGLPGAAGAPGAVGY--PGDRGDKGEPGLSGLP---GLKGETGPVGLQGFTGAPGPKGERGI 1211
            ||..|.||..|..|..||  ||:.|.|||||..|.|   ||||:.|..|.||.||:|||||:   
Zfish  1050 PGGPGFPGPKGEAGVPGYGLPGNPGPKGEPGTPGFPGPAGLKGQPGFPGPQGLTGSPGPKGD--- 1111

  Fly  1212 RGQPGLPATVPDIRGDKGSQGERGYTGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIP 1276
               ||||                |:.|..|..|.:||.|..|.||..|..|..|.||.|||.|||
Zfish  1112 ---PGLP----------------GFQGAPGNPGPKGLDGAPGPAGLNGAPGRPGDPGRSGLPGIP 1157

  Fly  1277 GAKGDI------GPRGEIGYPGVTIKGEKGLPGRPGRNGRQGLIGAPGLIGERGLPGLAGEPGLV 1335
            |.||..      ||.|:.|.||....|..||||:||..|.:|..|.||..|..|.||..|:.|..
Zfish  1158 GDKGLAGRDGIPGPAGQKGEPGAPGLGGPGLPGQPGLKGAKGDPGFPGPAGSAGFPGPKGDAGFP 1222

  Fly  1336 GLPGPIGPAGS--------KGERGLAGSPGQPGQDGFP----GAPGLKGDTGPQGFKGERGLNGF 1388
            ||||.||..|.        :|.:|:.|.||.||:.| |    |.|||:|..||.|..|.:|..|.
Zfish  1223 GLPGQIGSVGPPGPPGLPLQGPKGIQGPPGPPGRAG-PAGPAGPPGLEGPRGPPGSGGVKGEKGL 1286

  Fly  1389 EGQKGDKGDRGLQGPSGLPGLVGQKGDTGYPGLNGNDGPVGAPGERGFTGPKGRDGRDGTPGLPG 1453
            .|..|..|:.|.:|..|.||..|..|..|..||.|:.||.|.|   ||.|.||..|..|..||||
Zfish  1287 PGVPGTPGEAGQKGDYGSPGFPGSPGSPGPNGLKGDPGPQGVP---GFPGSKGVSGPPGISGLPG 1348

  Fly  1454 QKGEPGMLPPPGPKGEPGQP----GRNGPKGEPGRPGER------GLIGIQGERGEKGERGLIGE 1508
            .:|:||...||||.|...:|    |..||.|.||.||.|      ||.|:.|..|..|:.|.:|.
Zfish  1349 ARGDPGDKGPPGPPGYAAEPIVLKGERGPPGPPGNPGGRGQAGPIGLQGLPGSPGSSGDPGPMGP 1413

  Fly  1509 TGNVGRPGPKGD---RGEPGERGYEGAIGLIGQKGEPGAPAPAALDYLTGILITRHSQSETVPAC 1570
            .|..|.||.|||   .|:||:|||.|..|..|..|.||  ....|....|.|||||||:..||:|
Zfish  1414 PGFNGPPGRKGDTGPAGQPGQRGYPGPPGPDGAPGPPG--ITGTLSGAHGFLITRHSQTIEVPSC 1476

  Fly  1571 SAGHTELWTGYSLLYVDGNDYAHNQDLGSPGSCVPRFSTLPVLSCGQNNVCNYASRNDKTFWLTT 1635
            ..|.:.::.|||||||.||:.||.||||:.|||:.||||:|.:.|..|||||:|||||.::||:|
Zfish  1477 PDGTSPIYEGYSLLYVQGNERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLST 1541

  Fly  1636 NAAIP--MMPVENIEIRQYISRCVVCEAPANVIAVHSQTIEVPDCPNGWEGLWIGYSFLMHTAVG 1698
            ...:|  |.|:....|:.|||||.||||||.|||||||||::|.||..|:.|||||||:|||:.|
Zfish  1542 PQPMPMTMAPITGENIKPYISRCSVCEAPAMVIAVHSQTIQLPACPENWDTLWIGYSFMMHTSAG 1606

  Fly  1699 NGGGGQALQSPGSCLEDFRATPFIECNGAKGTCHFYETMTSFWMYNLESSQPFERPQQQTIKAGE 1763
            ..|.||||.|||||||:||:.|||||:| :|||::|....|||:..::.::.|.:||.:|:|||.
Zfish  1607 AEGSGQALASPGSCLEEFRSAPFIECHG-RGTCNYYGNSYSFWLATVDVNEMFRKPQSETLKAGN 1670

  Fly  1764 RQSHVSRCQVCMKNS 1778
            .::.||||.||||.:
Zfish  1671 LRTRVSRCVVCMKRT 1685

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Col4a1NP_723044.1 Collagen 104..161 CDD:189968 31/56 (55%)
Collagen 322..380 CDD:189968 33/65 (51%)
Collagen 413..465 CDD:189968 29/56 (52%)
Collagen 499..561 CDD:189968 19/61 (31%)
Collagen 574..632 CDD:189968 23/57 (40%)
Collagen 657..714 CDD:189968 25/56 (45%)
Collagen 765..824 CDD:189968 29/61 (48%)
Collagen 854..911 CDD:189968 26/59 (44%)
Collagen 884..943 CDD:189968 24/60 (40%)
Collagen 923..982 CDD:189968 31/62 (50%)
Collagen 1028..1085 CDD:189968 29/63 (46%)
Collagen 1229..1287 CDD:189968 26/63 (41%)
Collagen 1318..1376 CDD:189968 28/69 (41%)
Collagen 1399..1458 CDD:189968 27/58 (47%)
Collagen 1477..1534 CDD:189968 30/65 (46%)
C4 1555..1662 CDD:128421 61/108 (56%)
C4 1663..1777 CDD:128421 66/113 (58%)
col4a5XP_021333076.1 Collagen 50..109 CDD:189968 34/61 (56%)
Collagen 86..145 CDD:189968 28/58 (48%)
Collagen 284..341 CDD:189968 29/56 (52%)
Collagen 891..948 CDD:189968 27/59 (46%)
Collagen 1080..1137 CDD:189968 30/78 (38%)
Collagen 1110..1167 CDD:189968 29/78 (37%)
Collagen 1285..1342 CDD:189968 25/59 (42%)
C4 1462..1568 CDD:307529 58/105 (55%)
C4 1572..1682 CDD:307529 63/110 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BAFZ
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 1311 1.000 Inparanoid score I148
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D41315at33208
OrthoFinder 1 1.000 - - FOG0000443
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100768
Panther 1 1.100 - - O PTHR24023
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1239
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
98.870

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