DRSC/TRiP Functional Genomics Resources

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Protein Alignment Col4a1 and Col28a1

DIOPT Version :10

Sequence 1:NP_723044.1 Gene:Col4a1 / 33727 FlyBaseID:FBgn0000299 Length:1779 Species:Drosophila melanogaster
Sequence 2:NP_001418648.1 Gene:Col28a1 / 312115 RGDID:1564680 Length:1141 Species:Rattus norvegicus


Alignment Length:869 Identity:298/869 - (34%)
Similarity:368/869 - (42%) Gaps:338/869 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 DKGQKGDPGPYGQRGDKGERGSPGLHGQAGVPGVQGPAGNPGAPGINGKDGCDGQDGIPGLEGLS 181
            :||..|||||            ||.||..|:.|.:||.||||          |.|          
  Rat   243 EKGDPGDPGP------------PGTHGNPGIKGERGPKGNPG----------DAQ---------- 275

  Fly   182 GMPGPRGYAGQLGSKGEKGEPAKENGDYAKGEKGEPGWRGTAGLAGPQGFPGEKGERGDSGPYGA 246
                          |||.||         :|..|.||::|..|..|..|.||.||::|.:||||.
  Rat   276 --------------KGETGE---------RGPVGIPGYKGDKGERGECGKPGMKGDKGPAGPYGP 317

  Fly   247 KGPRGEHGLKGEKGASCYGPMKPGAPGIKGEKGEPASSFPVKPTHTVMGPRGDMGQKGEPGLVGR 311
            |||||..|:.|          .||.|                      ||:|..|.||||     
  Rat   318 KGPRGIQGIGG----------PPGDP----------------------GPKGFQGNKGEP----- 345

  Fly   312 KGEPGPEGDTGLDGQKGEKGLPGGPGDRGRQGNFGPPGSTGQKGDRGEPGLNGLPGNPGQKGEPG 376
             |.|||                           :||||:         ||:    |..|.|||.|
  Rat   346 -GPPGP---------------------------YGPPGA---------PGI----GQQGVKGERG 369

  Fly   377 RAGATGKPGLLGPPGPPGGGRGTPGPPGPKGPRGYVGAPGPQGLNGVDGLPGPQGYNGQKGGAGL 441
            :.|.||.||.:        |.|.||.|||:||.   ||||.:||.| :|:|||:           
  Rat   370 QEGRTGAPGPI--------GIGEPGQPGPRGPE---GAPGERGLPG-EGVPGPK----------- 411

  Fly   442 PGRPGNEGPPGKKGEKGTAGLNGPKGSIGPIGHPGPPGPEGQKGDAGLPGYGIQGSKGDAGIPGY 506
             |..|:|||.|.:|.:|.: :.|.||.:||:|..||                       |||||.
  Rat   412 -GEKGSEGPTGPQGLQGLS-IKGDKGDLGPVGPQGP-----------------------AGIPGI 451

  Fly   507 PGLKGSKGERGFKGNAGAPGDSKLGRPGTPGAAGAPGQKGDAGRPGTPGQKGDMGIKGDVGGKCS 571
                ||:||:|.:|..|.||      |..|...|:||.||:.||.|..|.:|.|||.        
  Rat   452 ----GSQGEQGIQGPTGPPG------PQGPPGQGSPGPKGEVGRMGPTGPRGPMGIG-------- 498

  Fly   572 SCRAGPKGDKGTSGL---PGIPGKDGARGPPGERGYPGERGHDGINGQTGPPGEKGEDGRTGLPG 633
              ..||||:.||.||   ||:||:|||.|..||.|.||.||.:|:.|: |.||.||::|:.|..|
  Rat   499 --IQGPKGEPGTVGLPGQPGVPGEDGASGKKGEAGLPGTRGPEGMPGK-GQPGPKGDEGKKGSKG 560

  Fly   634 ATGEPGKPALCDLSLIEPLKGDKGYPGAPGAKGVQGFKGAEGLPG--IPGPKGEFGFKGEKGLSG 696
            .                  :|.:|:||..|.||..|..|..|:||  ||||.|.   ||::    
  Rat   561 N------------------QGQRGFPGPEGPKGEPGIMGPFGMPGASIPGPSGP---KGDR---- 600

  Fly   697 APGNDGTPGRAGRDGYPGIPGQSIKGEPGF--HGRDGAKGDKGSFGRSGEKGEPGSCALDEIKMP 759
                          |.||:||  :|||||.  .|..||:|.:|..|..|.||:            
  Rat   601 --------------GGPGMPG--LKGEPGLSVRGPKGAQGPRGPVGAPGLKGD------------ 637

  Fly   760 AKGNKGEPGQTGMPGPPGEDGSPGERGYTGLKGNTGPQGPPGVEGPRGLNGPRGEKGNQGAVGVP 824
              |..|..|..|:|||||..|..|       .|:||.:|.|||.||.|.:||||       :|:.
  Rat   638 --GYPGVAGPRGLPGPPGPMGLRG-------VGDTGAKGEPGVRGPPGPSGPRG-------IGIQ 686

  Fly   825 GNPGKDGLRGIPGRNGQPGPRGEPGISRPGPMGPPGLNGLQGEKGDRGPTGPIGFPGADGSVGYP 889
            |..|..|.:|:                 |||.||||. |.||.||::||.   ||||:.|:||  
  Rat   687 GPKGDTGQKGL-----------------PGPPGPPGY-GSQGIKGEQGPQ---GFPGSKGTVG-- 728

  Fly   890 GDRGDAGLPGVSGRPGIVGEKGDVGPIGPAGVAGPPGVPGIDGVRGRDGAKGEPGSPGLVGMPGN 954
                 .||||..|..   ||:||||.                  :|..|..|||||||..|:.|.
  Rat   729 -----LGLPGQKGEH---GERGDVGR------------------KGEKGDIGEPGSPGKQGLQGP 767

  Fly   955 KGDRGAPGND-----------GPK 967
            |||.|....:           |||
  Rat   768 KGDLGLTKEEIIKLIIEICGCGPK 791

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Col4a1NP_723044.1 gly_rich_SclB <107..>361 CDD:468478 69/243 (28%)
gly_rich_SclB <355..>642 CDD:468478 111/289 (38%)
gly_rich_SclB <543..820 CDD:468478 107/283 (38%)
gly_rich_SclB <727..>968 CDD:468478 89/252 (35%)
gly_rich_SclB <969..>1218 CDD:468478
gly_rich_SclB <1186..>1420 CDD:468478
gly_rich_SclB <1321..>1547 CDD:468478
C4 1555..1662 CDD:128421
C4 1663..1777 CDD:128421
Col28a1NP_001418648.1 vWFA_subfamily_ECM 47..212 CDD:238727
gly_rich_SclB <257..446 CDD:468478 108/357 (30%)
gly_rich_SclB <363..632 CDD:468478 143/378 (38%)
Collagen 713..772 CDD:460189 35/89 (39%)
VWA 798..974 CDD:459670
Kunitz-type 1088..1138 CDD:444694
Blue background indicates that the domain is not in the aligned region.

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