DRSC/TRiP Functional Genomics Resources

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Protein Alignment Col4a1 and Col11a2

DIOPT Version :9

Sequence 1:NP_723044.1 Gene:Col4a1 / 33727 FlyBaseID:FBgn0000299 Length:1779 Species:Drosophila melanogaster
Sequence 2:XP_017457069.1 Gene:Col11a2 / 294279 RGDID:2373 Length:1914 Species:Rattus norvegicus


Alignment Length:1622 Identity:611/1622 - (37%)
Similarity:723/1622 - (44%) Gaps:434/1622 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 PIDDSYDIVDSAGVARGDLPPK---NCTAGYAG-------CVPKCIAEKGNRGLPGPLGPTGLKG 104
            |..||:. .:..|.. |..||.   :.|.||..       ..|...||..:.|.... ||.||||
  Rat   500 PTADSFQ-AEEYGEG-GTEPPAGFYDYTYGYGDDYREETELGPALSAETDHTGAVAH-GPRGLKG 561

  Fly   105 EMGF-------------PGMEGP---SGDKGQKGDPGPYGQRGDKGERGSPGLHGQAGVPGVQGP 153
            |.|.             ||.|||   :|..|.:|:|||.   ||.||||.|   |:||:||..||
  Rat   562 EKGEPAVLEPGMFVEGPPGPEGPAGLAGPPGIQGNPGPV---GDPGERGPP---GRAGLPGSDGP 620

  Fly   154 AGNPGA----PGINGKDGCDGQDGIPGLE------------GLSGMPGPRGYAGQLGSKGEKGEP 202
            .|.||.    |...|..|.|....:...|            .|.|.|||.||.|:.|..|:.|.|
  Rat   621 PGPPGTSLMLPFRFGSSGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSP 685

  Fly   203 AKENGDYAKGEKGEPGWRGTAGLAGPQGF---PGEKGERGDSGPYGAKGPRGEHGLKGEKGASCY 264
                     |.|||.|..|..|..||||.   ||:.|.||.:|..||:|..||.|:||::|..  
  Rat   686 ---------GLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGEPGVKGDRGFD-- 739

  Fly   265 GPMKPGAPGIKGEKGEPASSFPVKPTHTVMGPRGDMGQKGEPGLVGRKGEPGPEGDTGLDGQKGE 329
                 |.||:.||||:                |||.|.:|.|      |.||.:|:.|.||:.|.
  Rat   740 -----GLPGLPGEKGQ----------------RGDTGAQGLP------GPPGEDGERGDDGEIGP 777

  Fly   330 KGLPGGPGDRGRQGNFGPPGSTGQKGDRGEPGLNGLPGNPGQKGEPGRAGATGKPGLLGPPGPPG 394
            :||||..|.||..|..||||..|..|.||..|.:|..|:.|.:||||..|..|.||..|.|||  
  Rat   778 RGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLPGP-- 840

  Fly   395 GGRGTPGPPGPKGPRGYVGAPGPQGLNGVDGLPGPQGYNGQKGGAGLPGRPGNEGPPGKKGEKGT 459
              :|..||.|.|||||..|.|         |:||..         ||||.||.|||||.||.:  
  Rat   841 --QGAIGPHGEKGPRGKPGLP---------GMPGSD---------GLPGHPGKEGPPGTKGNQ-- 883

  Fly   460 AGLNGPKGSIGPIGHPGPPGPEGQKGDAGLPGYGIQGSKGDAGIPGYPGLKGSKGERGFKGNAGA 524
                ||.|..||:|:|||.|.:|..|..||.|:  :|.||:.|.||:.|..|.||:||       
  Rat   884 ----GPSGPQGPLGYPGPRGVKGVDGIRGLKGH--KGEKGEDGFPGFKGDIGVKGDRG------- 935

  Fly   525 PGDSKLGRPGTPGAAGAPGQKGDAGRPGTPGQKGDMGIKGDVGGKCSSCRAGPKGDKGTSGLPGI 589
                ::|.||:.|..|..|.||..|..|.||..|.|                  |:||..|:||:
  Rat   936 ----EVGVPGSRGEDGPEGPKGRTGPTGDPGPTGLM------------------GEKGKLGVPGL 978

  Fly   590 PGKDGARGPPGERGYP------GERGHDGINGQTGPPGEKGEDGRTGLPGATGEPGKPALCDLSL 648
            ||..|.:||.|..|:|      ||:|..|::|::||.||:|.                       
  Rat   979 PGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGP----------------------- 1020

  Fly   649 IEPLKGDKGYPGAPGAKGVQGFKGAEGLPGIPGPKGEFGFKGEKGLSGAPGNDGTPGRAGRDGYP 713
                .|.:|..|..||.|..|.||..|..|..||.||.|..|.:|.:|.||..|.||.||:||.|
  Rat  1021 ----TGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPAGKDGLP 1081

  Fly   714 GIPGQSIKGEPGFHGRDGAKGDKGSFGRSGEKGEPGSCALDEIKMPAKGNKGEPGQTGMPGPPGE 778
            |.|||  :||.||.|:.|..|..|..|..|..||             .|..||.|..|.||||||
  Rat  1082 GHPGQ--RGEVGFQGKTGPPGPPGVVGPQGAAGE-------------SGPMGERGHPGPPGPPGE 1131

  Fly   779 DGSPGERGYTGLKGNTGPQGPPGVEGPRGLNGPRGEKGNQGAVGVPGNPGKDGLRGIPGRNGQPG 843
            .|.||..|..|.||:.||.|.||.:||.                        ||||.||..|.||
  Rat  1132 QGLPGTAGKDGTKGDPGPPGAPGKDGPA------------------------GLRGFPGERGLPG 1172

  Fly   844 PRGEPGI-SRPGPMGPPGLNGLQGEKGDRGPTGPIGFPGADGSVGYPGDRGDAGLPGVSGRPGIV 907
            ..|.||: ...||.||||..|..||:|..|..||||.||..|..|.||..|:.|:|         
  Rat  1173 TAGGPGLKGNEGPAGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVP--------- 1228

  Fly   908 GEKGDVGPIGPAGVAGPPGVP---GIDGVRGRDGAKGEPGSPGLVGMPGNKGDRGAPGNDGPKGF 969
            ||||.:||.|..||.||.|:|   |..||.|.||.|||.|.||..|..||||:.|.|        
  Rat  1229 GEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPP-------- 1285

  Fly   970 AGVTGAPGKRGPAGIPGVSGAKGDKGATGLTGNDGPVGGRGPPGAPGLMGIKGDQGLAGAPGQQG 1034
                |.||..||.|.||.:||.|:.||            |||.|..|..|.:|.:|..|.||..|
  Rat  1286 ----GPPGPIGPVGQPGAAGADGEPGA------------RGPQGHFGAKGDEGTRGFNGPPGPIG 1334

  Fly  1035 LDGMP---GEKGNQGFPGLDGPPGLPGDASEKGQKGEPGPSGLRGDTGPAGTPGWPGEKGLPGLA 1096
            |.|:|   ||||..|..|..||||.||..         ||:|..|..||.|.||        |: 
  Rat  1335 LQGLPGPFGEKGETGDVGPMGPPGPPGPR---------GPAGPNGADGPQGPPG--------GV- 1381

  Fly  1097 VHGRAGPPGEKGDQGRSGIDGRDGINGEKGEQGLQGVWGQPGEKGSVGAPGIPGAPGMDGLPGAA 1161
              |..|||||||:.|.|   |..|:.||.|.:|.:|..|:.||.|..|..|.||..|..|..|..
  Rat  1382 --GNLGPPGEKGEPGES---GSPGVQGEPGVKGPRGERGEKGESGQAGEAGPPGPKGPTGDDGPK 1441

  Fly  1162 GAPGAVGYPGDRGDKGEPGLSGLPGLKGETGPVGLQGFTGAPGPKGERGIRGQPGLPATVPDIRG 1226
            |.||.||:|||            ||..||.||   :|..||.|.:||.|..||||.|        
  Rat  1442 GNPGPVGFPGD------------PGPPGEAGP---RGQDGAKGSQGEDGEPGQPGSP-------- 1483

  Fly  1227 DKGSQGERGYTGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDIGPRGEIGYP 1291
                    |.|||.|..|..|..||||..|.:|.:|.:|..|..|..|.||..|.:||.|..|.|
  Rat  1484 --------GPTGENGPPGPLGKRGPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGPAGKP 1540

  Fly  1292 GVTIKGEKGLPGRPGRNGRQGLIGAPGLIGERGLPGLAGEPGLVGLPGPIGPAGSKGERGLAGSP 1356
                             |..||.|.||.:|::|.||..|:   .|.|||:||             
  Rat  1541 -----------------GPDGLRGLPGSVGQQGRPGATGQ---AGPPGPVGP------------- 1572

  Fly  1357 GQPGQDGFPGAPGLKGDTGPQGFKGERGLNGF---EGQKGDKGDRGLQGPSGLPGLVGQKGDTGY 1418
                    ||.|||:||.|.:|.||..||.|.   .|::|:||||||.||.|.|   ||||:||.
  Rat  1573 --------PGLPGLRGDAGAKGEKGHPGLIGLIGPTGEQGEKGDRGLPGPQGSP---GQKGETGI 1626

  Fly  1419 PGLNGNDGPVGAPGERGFTGPKGRDGRDGTPGLPGQKGEPGMLPPPGPKGEPGQPGRNGPKGEPG 1483
            ||.:|..||.|.||..|.:||||..|..|               |.|||||.|.   .||.|.||
  Rat  1627 PGASGPIGPGGPPGLPGPSGPKGAKGATG---------------PAGPKGEKGV---QGPPGHPG 1673

  Fly  1484 RPGERGLIGIQGERGEKGERGLIGETGNVGRP----GPKGDRGEPGERGYEGAIGLIGQKGEP-- 1542
            .|||                        |.:|    .||..|     |..:|:..:..::..|  
  Rat  1674 PPGE------------------------VIQPLPIQMPKKTR-----RSVDGSKLMQDEEATPTG 1709

  Fly  1543 GAP-APAALDYLTGILI--------------TRHSQSETVPACSAGHTELWTGYSLLYVDGN 1589
            ||| :||.|:.:.|.|.              |:.|.:.|.......|.||..|.  .:||.|
  Rat  1710 GAPGSPAGLEEIFGSLDSLREEIEQMRRPTGTQDSPARTCQDLKLCHPELPDGE--YWVDPN 1769

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Col4a1NP_723044.1 Collagen 104..161 CDD:189968 31/76 (41%)
Collagen 322..380 CDD:189968 28/57 (49%)
Collagen 413..465 CDD:189968 18/51 (35%)
Collagen 499..561 CDD:189968 23/61 (38%)
Collagen 574..632 CDD:189968 24/63 (38%)
Collagen 657..714 CDD:189968 27/56 (48%)
Collagen 765..824 CDD:189968 24/58 (41%)
Collagen 854..911 CDD:189968 26/56 (46%)
Collagen 884..943 CDD:189968 28/61 (46%)
Collagen 923..982 CDD:189968 27/61 (44%)
Collagen 1028..1085 CDD:189968 26/59 (44%)
Collagen 1229..1287 CDD:189968 23/57 (40%)
Collagen 1318..1376 CDD:189968 19/57 (33%)
Collagen 1399..1458 CDD:189968 27/58 (47%)
Collagen 1477..1534 CDD:189968 15/60 (25%)
C4 1555..1662 CDD:128421 12/49 (24%)
C4 1663..1777 CDD:128421
Col11a2XP_017457069.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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