Sequence 1: | NP_723044.1 | Gene: | Col4a1 / 33727 | FlyBaseID: | FBgn0000299 | Length: | 1779 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_017457069.1 | Gene: | Col11a2 / 294279 | RGDID: | 2373 | Length: | 1914 | Species: | Rattus norvegicus |
Alignment Length: | 1622 | Identity: | 611/1622 - (37%) |
---|---|---|---|
Similarity: | 723/1622 - (44%) | Gaps: | 434/1622 - (26%) |
- Green bases have known domain annotations that are detailed below.
Fly 50 PIDDSYDIVDSAGVARGDLPPK---NCTAGYAG-------CVPKCIAEKGNRGLPGPLGPTGLKG 104
Fly 105 EMGF-------------PGMEGP---SGDKGQKGDPGPYGQRGDKGERGSPGLHGQAGVPGVQGP 153
Fly 154 AGNPGA----PGINGKDGCDGQDGIPGLE------------GLSGMPGPRGYAGQLGSKGEKGEP 202
Fly 203 AKENGDYAKGEKGEPGWRGTAGLAGPQGF---PGEKGERGDSGPYGAKGPRGEHGLKGEKGASCY 264
Fly 265 GPMKPGAPGIKGEKGEPASSFPVKPTHTVMGPRGDMGQKGEPGLVGRKGEPGPEGDTGLDGQKGE 329
Fly 330 KGLPGGPGDRGRQGNFGPPGSTGQKGDRGEPGLNGLPGNPGQKGEPGRAGATGKPGLLGPPGPPG 394
Fly 395 GGRGTPGPPGPKGPRGYVGAPGPQGLNGVDGLPGPQGYNGQKGGAGLPGRPGNEGPPGKKGEKGT 459
Fly 460 AGLNGPKGSIGPIGHPGPPGPEGQKGDAGLPGYGIQGSKGDAGIPGYPGLKGSKGERGFKGNAGA 524
Fly 525 PGDSKLGRPGTPGAAGAPGQKGDAGRPGTPGQKGDMGIKGDVGGKCSSCRAGPKGDKGTSGLPGI 589
Fly 590 PGKDGARGPPGERGYP------GERGHDGINGQTGPPGEKGEDGRTGLPGATGEPGKPALCDLSL 648
Fly 649 IEPLKGDKGYPGAPGAKGVQGFKGAEGLPGIPGPKGEFGFKGEKGLSGAPGNDGTPGRAGRDGYP 713
Fly 714 GIPGQSIKGEPGFHGRDGAKGDKGSFGRSGEKGEPGSCALDEIKMPAKGNKGEPGQTGMPGPPGE 778
Fly 779 DGSPGERGYTGLKGNTGPQGPPGVEGPRGLNGPRGEKGNQGAVGVPGNPGKDGLRGIPGRNGQPG 843
Fly 844 PRGEPGI-SRPGPMGPPGLNGLQGEKGDRGPTGPIGFPGADGSVGYPGDRGDAGLPGVSGRPGIV 907
Fly 908 GEKGDVGPIGPAGVAGPPGVP---GIDGVRGRDGAKGEPGSPGLVGMPGNKGDRGAPGNDGPKGF 969
Fly 970 AGVTGAPGKRGPAGIPGVSGAKGDKGATGLTGNDGPVGGRGPPGAPGLMGIKGDQGLAGAPGQQG 1034
Fly 1035 LDGMP---GEKGNQGFPGLDGPPGLPGDASEKGQKGEPGPSGLRGDTGPAGTPGWPGEKGLPGLA 1096
Fly 1097 VHGRAGPPGEKGDQGRSGIDGRDGINGEKGEQGLQGVWGQPGEKGSVGAPGIPGAPGMDGLPGAA 1161
Fly 1162 GAPGAVGYPGDRGDKGEPGLSGLPGLKGETGPVGLQGFTGAPGPKGERGIRGQPGLPATVPDIRG 1226
Fly 1227 DKGSQGERGYTGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDIGPRGEIGYP 1291
Fly 1292 GVTIKGEKGLPGRPGRNGRQGLIGAPGLIGERGLPGLAGEPGLVGLPGPIGPAGSKGERGLAGSP 1356
Fly 1357 GQPGQDGFPGAPGLKGDTGPQGFKGERGLNGF---EGQKGDKGDRGLQGPSGLPGLVGQKGDTGY 1418
Fly 1419 PGLNGNDGPVGAPGERGFTGPKGRDGRDGTPGLPGQKGEPGMLPPPGPKGEPGQPGRNGPKGEPG 1483
Fly 1484 RPGERGLIGIQGERGEKGERGLIGETGNVGRP----GPKGDRGEPGERGYEGAIGLIGQKGEP-- 1542
Fly 1543 GAP-APAALDYLTGILI--------------TRHSQSETVPACSAGHTELWTGYSLLYVDGN 1589 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Col4a1 | NP_723044.1 | Collagen | 104..161 | CDD:189968 | 31/76 (41%) |
Collagen | 322..380 | CDD:189968 | 28/57 (49%) | ||
Collagen | 413..465 | CDD:189968 | 18/51 (35%) | ||
Collagen | 499..561 | CDD:189968 | 23/61 (38%) | ||
Collagen | 574..632 | CDD:189968 | 24/63 (38%) | ||
Collagen | 657..714 | CDD:189968 | 27/56 (48%) | ||
Collagen | 765..824 | CDD:189968 | 24/58 (41%) | ||
Collagen | 854..911 | CDD:189968 | 26/56 (46%) | ||
Collagen | 884..943 | CDD:189968 | 28/61 (46%) | ||
Collagen | 923..982 | CDD:189968 | 27/61 (44%) | ||
Collagen | 1028..1085 | CDD:189968 | 26/59 (44%) | ||
Collagen | 1229..1287 | CDD:189968 | 23/57 (40%) | ||
Collagen | 1318..1376 | CDD:189968 | 19/57 (33%) | ||
Collagen | 1399..1458 | CDD:189968 | 27/58 (47%) | ||
Collagen | 1477..1534 | CDD:189968 | 15/60 (25%) | ||
C4 | 1555..1662 | CDD:128421 | 12/49 (24%) | ||
C4 | 1663..1777 | CDD:128421 | |||
Col11a2 | XP_017457069.1 | None | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |