| Sequence 1: | NP_723044.1 | Gene: | Col4a1 / 33727 | FlyBaseID: | FBgn0000299 | Length: | 1779 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_445756.1 | Gene: | Col1a1 / 29393 | RGDID: | 61817 | Length: | 1453 | Species: | Rattus norvegicus |
| Alignment Length: | 1404 | Identity: | 561/1404 - (39%) |
|---|---|---|---|
| Similarity: | 645/1404 - (45%) | Gaps: | 292/1404 - (20%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 63 VARGDLPPKNCTAGYAGCVPKCIAE--------------KGNRGLPGPLGPTGLKGEMGFPGMEG 113
Fly 114 PSGDKGQKGDPGPYGQRGDKGERGSPGLHGQA---GVPGVQGPAGN---PGAPGINGKDGCDGQD 172
Fly 173 GIPGLEGLSGMPGPRGYAGQLGSKGEKGEPAKENGDYAKGEKGEPGWRGTAGLAGPQGFPGEKGE 237
Fly 238 RGDSGPYGAK------GPRGEHGLKGEKGASCYGPMKPGAPGIKGEKGEPASSFPVKPTHTVMGP 296
Fly 297 RGDMGQKGEPGLVGRKGEPGPEGDTGLDGQKGEKGLPGGPGDRGRQGNFGPPGSTGQKGDRGEPG 361
Fly 362 LNGLPGNPGQKGEPGRAGATGKPGLLGPPGPPGGGRGTPGPPGPKGPRGYVGAPGPQGLNGVDGL 426
Fly 427 PGPQGYNGQKGGAGLPGRPGNEGPPGKKGEKGTAGLNGPKGSIGPIGHPGPPGPEGQKGDAGLPG 491
Fly 492 YGIQGSKGDAGIPGYPGLKGSKGERGFKGNAGAPG-DSKLGRPGTPGAAGAPGQKGDAGRPGTPG 555
Fly 556 QKGDMGIKGDVGGKCSSCRAGPKGDKGTSGLPGIPGKDGARGPPGERGYPGERGHDGINGQTGPP 620
Fly 621 GEKGEDGRTGLP---GATGEPGKPALCDLSLIEPLKGDKGYPGAPGAKGVQGFKGAEGLPGIPGP 682
Fly 683 KGEFGFKGEKGLSGAPGNDGTPGRAGRDGYPGIPG-QSIKGEPGFHGRDGAKGDKGSFGRSGEKG 746
Fly 747 EPGSCALDEIKMPA--KGNKGEPGQTGMPGPPGEDGSPGERGYTGLKGNTGPQGPPGVEGPRGLN 809
Fly 810 GPRGEKGNQGAVGVPGNPGKDGLRGIPGRNGQPGPRGEPG----ISRPGPMGPPGLNGLQGEKGD 870
Fly 871 RGPTGPIGF---PGADGSVGYPGDRGDAGLPGVSGRPGIVGEKGDVGPIGPAGVAGPPGVPGIDG 932
Fly 933 VRGRDGAKGEPGSP-GLVGMPGNKGDRGAPGNDGPKGFAGVTGAPGKRGPAGIPGVSGAKGDKGA 996
Fly 997 TGLTGNDGPVGGRGPPGAPGLMGIKGDQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGLPGDAS 1061
Fly 1062 EKGQKGEPGPSGLRGDTGPAGTPGWPGEKGLPGLAVHGRAGPPGEKGDQGRSGIDGRDGINGEKG 1126
Fly 1127 EQGLQGVWGQPGEKGSVGAPGIPGAPGMDGLPGAAGAPGAVGYPGDRGDKGEPGLSGLPGLKGET 1191
Fly 1192 GPVGLQGFTGAPGPKGERGIRGQPGLPATVPDIRGDKGSQGERGYTGEKGEQGERGLTGPAGVAG 1256
Fly 1257 AKGDRGLQGPPGASGLNGIPGAKGDIGPRGEIGYPGVTIKGEKGLPGRPGRNGRQGLIGAPGLIG 1321
Fly 1322 ERGLPGLAGEP---GLVGLPGPIGPAGSKGERGLAGSPGQPGQDGFPGAPGLKGDTGPQGFK--- 1380
Fly 1381 ---GERGLNGFEGQKGDKG----DRGLQGPSGLPGLVGQ 1412 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| Col4a1 | NP_723044.1 | Collagen | 104..161 | CDD:189968 | 23/62 (37%) |
| Collagen | 322..380 | CDD:189968 | 23/57 (40%) | ||
| Collagen | 413..465 | CDD:189968 | 21/51 (41%) | ||
| Collagen | 499..561 | CDD:189968 | 27/62 (44%) | ||
| Collagen | 574..632 | CDD:189968 | 27/57 (47%) | ||
| Collagen | 657..714 | CDD:189968 | 28/56 (50%) | ||
| Collagen | 765..824 | CDD:189968 | 25/58 (43%) | ||
| Collagen | 854..911 | CDD:189968 | 25/59 (42%) | ||
| Collagen | 884..943 | CDD:189968 | 21/58 (36%) | ||
| Collagen | 923..982 | CDD:189968 | 23/59 (39%) | ||
| Collagen | 1028..1085 | CDD:189968 | 24/56 (43%) | ||
| Collagen | 1229..1287 | CDD:189968 | 22/57 (39%) | ||
| Collagen | 1318..1376 | CDD:189968 | 31/60 (52%) | ||
| Collagen | 1399..1458 | CDD:189968 | 4/14 (29%) | ||
| Collagen | 1477..1534 | CDD:189968 | |||
| C4 | 1555..1662 | CDD:128421 | |||
| C4 | 1663..1777 | CDD:128421 | |||
| Col1a1 | NP_445756.1 | VWC | 31..86 | CDD:214564 | 5/20 (25%) |
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 97..1206 | 547/1346 (41%) | |||
| Nonhelical region (N-terminal) | 152..167 | 2/14 (14%) | |||
| Triple-helical region | 168..1181 | 518/1250 (41%) | |||
| Collagen | 225..284 | CDD:189968 | 28/61 (46%) | ||
| Collagen | 264..316 | CDD:189968 | 24/68 (35%) | ||
| Collagen | 390..449 | CDD:189968 | 36/92 (39%) | ||
| Collagen | 486..545 | CDD:189968 | 30/85 (35%) | ||
| Collagen | 525..584 | CDD:189968 | 32/76 (42%) | ||
| Collagen | 657..714 | CDD:189968 | 25/65 (38%) | ||
| Collagen | 696..748 | CDD:189968 | 24/57 (42%) | ||
| Cell attachment site. /evidence=ECO:0000255 | 734..736 | 0/1 (0%) | |||
| Collagen | 1068..1123 | CDD:189968 | 31/102 (30%) | ||
| Cell attachment site. /evidence=ECO:0000255 | 1082..1084 | 1/1 (100%) | |||
| Major antigenic determinant (of neutral salt-extracted rat skin collagen) | 1176..1186 | 4/11 (36%) | |||
| Nonhelical region (C-terminal) | 1182..1207 | 4/24 (17%) | |||
| COLFI | 1219..1452 | CDD:279718 | 3/12 (25%) | ||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 1 | 0.900 | - | - | E33208_3BAFZ | |
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 1 | 1.000 | - | - | ||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 2 | 1.900 | |||||