DRSC/TRiP Functional Genomics Resources

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Protein Alignment Col4a1 and col-133

DIOPT Version :10

Sequence 1:NP_723044.1 Gene:Col4a1 / 33727 FlyBaseID:FBgn0000299 Length:1779 Species:Drosophila melanogaster
Sequence 2:NP_502700.1 Gene:col-133 / 186083 WormBaseID:WBGene00000707 Length:304 Species:Caenorhabditis elegans


Alignment Length:305 Identity:110/305 - (36%)
Similarity:123/305 - (40%) Gaps:100/305 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   548 AGRPGTPGQKG-DMGIKGDVGGKCSS-CRAGPKGDKGTSGLPGIPGKDGARGPPGERGYPGERGH 610
            |.:.|..|.:| |.|.:|..||.||. |..|..|..||.|.||.||:.||.|.||..|.|..:..
 Worm    78 ARQAGYGGDEGVDQGSEGAQGGSCSGCCLPGAAGPAGTPGKPGRPGRPGAAGLPGNPGRPPAQPC 142

  Fly   611 DGINGQTGPPGEKGEDGRTGLPGATGEPGKPALCDLSLIEPLKGDKGYPGAPGAKGVQGFKGAEG 675
            :.|   |.||.:....|..|.|||.|.               :||.|.|||||    || .||  
 Worm   143 EPI---TPPPCKPCPQGPAGAPGAPGP---------------QGDAGAPGAPG----QG-SGA-- 182

  Fly   676 LPGIPGPKGEFGFKGEKGLSGAPGNDGTPGRAGRDGYPGIPGQSIKGEPGFHGRDGAKGDKGSFG 740
              |.|||      .|.||.||||||   ||:||..|.||...||                     
 Worm   183 --GAPGP------AGPKGASGAPGN---PGQAGAPGQPGADAQS--------------------- 215

  Fly   741 RSGEKGEPGSCALDEIKMPAKGNKGEPGQTGMPGPPGEDGSPGERGYTGLKGNTGPQGPPGVEGP 805
                :..||:                |||.|..||||..|||      |..|..|..|.||.:||
 Worm   216 ----ESIPGA----------------PGQAGPQGPPGPAGSP------GAPGGPGQPGAPGQKGP 254

  Fly   806 RGLNGPRGEKGNQGAVGVPGNPGKDGLRGIPGRNGQPGPRGEPGI 850
            .               |.||.||.||..|.||:.||.|..||.||
 Worm   255 S---------------GAPGQPGADGNPGAPGQPGQAGGAGEKGI 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Col4a1NP_723044.1 gly_rich_SclB <107..>361 CDD:468478
gly_rich_SclB <355..>642 CDD:468478 38/95 (40%)
gly_rich_SclB <543..820 CDD:468478 93/273 (34%)
gly_rich_SclB <727..>968 CDD:468478 38/124 (31%)
gly_rich_SclB <969..>1218 CDD:468478
gly_rich_SclB <1186..>1420 CDD:468478
gly_rich_SclB <1321..>1547 CDD:468478
C4 1555..1662 CDD:128421
C4 1663..1777 CDD:128421
col-133NP_502700.1 Col_cuticle_N 12..64 CDD:198156
PRK07764 <89..281 CDD:236090 102/289 (35%)
Blue background indicates that the domain is not in the aligned region.

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