Protein Alignment Col4a1 and col-117

DIOPT Version :10

• Sequence 1: NP_723044.1
• Gene: Col4a1 / 33727
• FlyBaseID: FBgn0000299
• Length: 1779
• Species: Drosophila melanogaster
• Sequence 2: NP_501526.1
• Gene: col-117 / 177694
• WormBaseID: WBGene00000691
• Length: 299
• Species: Caenorhabditis elegans
• Alignment Length: 246
• Identity: 93/246 - (37%)
• Similarity: 107/246 - (43%)
• Gaps: 49/246 - (19%)

  Fly   735 DKGSFGRSGEKGEPGSCALDEIKMPAKGNKGEPGQTGMPGPPGEDGSPGERGYTGLKGNTGPQGP 799
            |.|..|.|...|...:|.|.....|| |..|:||:.|.||.||..|:||.......:..|.|...
 Worm    83 DAGVTGGSASAGGCDACCLPGAAGPA-GTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCK 146

  Fly   800 PGVEGPRGLNGPRGEKGNQGAVGVPGNPGKDGLRGIPGRNGQPGPRGEPGISRPGPMGPPGLNGL 864
            |...||.|..||.|..|:.||.|.||.||.||..|.||..|..||.|.||  .||..|.||.:
 Worm   147 PCPAGPAGAPGPAGPAGDAGANGNPGAPGNDGQPGAPGNKGPSGPNGNPG--APGAPGQPGQD-- 207

  Fly   865 QGEKGDRGPTGPIGFPGADGSVGYPGDRGDAGLPGVSGRPGIVGEKGDVGPIGPAGVAGPPGVPG 929
                   .|:.|| .|||.                              ||.||||..||||.|
 Worm   208 -------APSEPI-TPGAP------------------------------GPAGPAGPQGPPGAP- 233

  Fly   930 IDGVRGRDGAKGEPGSPGLVGMPGNKGDRGAPGNDGPKGFAGVTGAPGKRG 980
                 |:.|..|:||:||..|..||.|..||.||.|..|.||.:|..|::|
 Worm   234 -----GQPGHDGQPGAPGPKGPNGNPGAPGADGNPGAPGQAGTSGGAGEKG 279

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Col4a1	NP_723044.1	gly_rich_SclB	<107..>361	CDD:468478
		gly_rich_SclB	<355..>642	CDD:468478
		gly_rich_SclB	<543..820	CDD:468478	31/84 (37%)
		gly_rich_SclB	<727..>968	CDD:468478	87/232 (38%)
		gly_rich_SclB	<969..>1218	CDD:468478	5/12 (42%)
		gly_rich_SclB	<1186..>1420	CDD:468478
		gly_rich_SclB	<1321..>1547	CDD:468478
		C4	1555..1662	CDD:128421
		C4	1663..1777	CDD:128421
col-117	NP_501526.1	Col_cuticle_N	12..64	CDD:198156
		gly_rich_SclB	<71..>279	CDD:468478	92/244 (38%)