Protein Alignment Col4a1 and col-36

DIOPT Version :10

• Sequence 1: NP_723044.1
• Gene: Col4a1 / 33727
• FlyBaseID: FBgn0000299
• Length: 1779
• Species: Drosophila melanogaster
• Sequence 2: NP_495487.1
• Gene: col-36 / 174178
• WormBaseID: WBGene00000613
• Length: 307
• Species: Caenorhabditis elegans
• Alignment Length: 278
• Identity: 101/278 - (36%)
• Similarity: 119/278 - (42%)
• Gaps: 74/278 - (26%)

  Fly   245 GAKGPRGEHGLKGEKGASCYGPMKPGAPGIKGEKGEPASSFPVKPTHTVMGPRGDMGQKGEPGLV 309
            |....|.:.|.|...|:        |..|..|..|         ||    |...|:|....|...
 Worm    74 GVTRSRRDAGYKEGSGS--------GGSGSGGYGG---------PT----GAGADIGPTCCPCQQ 117

  Fly   310 GRKGEPGPEGDTGLDGQKGEKGLPGGPGDRGRQGNF----------------GPPGSTGQKGDRG 358
            |..|.|||.||||.:|..|..|.||.|   |::|:.                ||.|:.||:|.:|
 Worm   118 GPAGPPGPAGDTGPNGNDGHHGAPGVP---GKEGSILSSALPPSEPCIICPPGPQGAVGQQGPKG 179

  Fly   359 EPGLNGLPGNPGQKGEPGRAGATGKPGLLGPPGPPGGGRGTPGPPGPKGPRGYV----GAPGPQG 419
            .      ||..|:..|....|..|:||::|||||| ||.|.||||||.|..|.|    ||.||.|
 Worm   180 P------PGPKGKSQERAADGKNGEPGMIGPPGPP-GGVGEPGPPGPAGQPGRVIQVNGAAGPAG 237

  Fly   420 LNGVDGLPGPQGYNGQKGGAGLPGRPGNEGPPGKKGEKGTAGLNGPKGSIGPIGHPGPPGPEGQK 484
            ..||.|.|||:|..|..|...:    |.:||||..|..|..|..||         |||.||:|..
 Worm   238 PRGVKGPPGPKGLPGIAGLTEI----GGQGPPGDAGGPGPVGGQGP---------PGPQGPQGPP 289

  Fly   485 GDAGL----------PGY 492
            ||.|.          |||
 Worm   290 GDEGSCDHCPEPRTPPGY 307

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Col4a1	NP_723044.1	gly_rich_SclB	<107..>361	CDD:468478	39/131 (30%)
		gly_rich_SclB	<355..>642	CDD:468478	64/152 (42%)
		gly_rich_SclB	<543..820	CDD:468478
		gly_rich_SclB	<727..>968	CDD:468478
		gly_rich_SclB	<969..>1218	CDD:468478
		gly_rich_SclB	<1186..>1420	CDD:468478
		gly_rich_SclB	<1321..>1547	CDD:468478
		C4	1555..1662	CDD:128421
		C4	1663..1777	CDD:128421
col-36	NP_495487.1	Col_cuticle_N	15..67	CDD:198156