Sequence 1: | NP_723044.1 | Gene: | Col4a1 / 33727 | FlyBaseID: | FBgn0000299 | Length: | 1779 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_031764.2 | Gene: | Col7a1 / 12836 | MGIID: | 88462 | Length: | 2944 | Species: | Mus musculus |
Alignment Length: | 1785 | Identity: | 737/1785 - (41%) |
---|---|---|---|
Similarity: | 884/1785 - (49%) | Gaps: | 362/1785 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 13 VIAGALVGADAQFWK--TAGTAGSIQDSVKHYNRNEPKFPIDDSYDIVDSAGVAR--GDLPPKNC 73
Fly 74 TAGY------AGCVPKCIAEKGNRGLPGPLGPTGLKGEMGFPGMEGPSGDKGQKGDPGPYGQRGD 132
Fly 133 ---KGERGSPGLHGQAGVPGVQGPAGNPGAPGINGKDGCDGQDGIPGLEGLSGMPGPRGYAGQLG 194
Fly 195 SKGEKGEPAKENGDYAKGEKGEPGWRGTAGLAGPQGFPGEKGERGDSGPYGAKGPRGEHGLKGEK 259
Fly 260 GASCYGPMKPGAPGI--KGEKGEPASSFPVKPTHTVMGPRGDMGQKGEPGLVGRKGEPGPEGDTG 322
Fly 323 LDGQKGEK--------GLPGGPGDRGRQGNFGPPGSTGQKGDR------GEPGLNGLPGNPGQKG 373
Fly 374 EPGRAGATGKPGLLGPPGPPG--GGRGTPGPPG-PKGPRGYVGAPGPQGLNGVDGLPGPQGYNGQ 435
Fly 436 KGGAGLPG--RPGNEGPPGKKGEKGTAGLNGPKGSIGPIGHPGPPGPEGQKGDAGLPG------- 491
Fly 492 YGIQGSKGDAGIPGYPGLKGSKGERGF------------KGNAGAPGDSKLGRPGTPGAAGAPGQ 544
Fly 545 KGDAGRPGTPGQKGDMGI----KGDVGGKCSSCRAGPKGDKGTSGLPGIPGK---DGARGPPGER 602
Fly 603 GYPGERGHDGINGQTGPPGEKGEDGRTGLPGATGEPGKPALCDLS---------LIEPLKGDKGY 658
Fly 659 PGAPGAKGVQGFKGAEGLPGI------PGPKGEFGFKGEKGLSGAPGND---------GTPGRAG 708
Fly 709 RDGYPGIPGQ---SIKGEPGFHGRDGAKGDKGSFGRSGE---------KGEPGS----------- 750
Fly 751 ----CALDEI------------KMPAK--GNKGEPGQTGMPGPPGEDGSPGERGYTGLKGNTGPQ 797
Fly 798 GPPGVE-GPRGLNGPRGEKGNQGAVGVPGNP---------------------------GKDGLRG 834
Fly 835 IPGRNGQPGPRGEPGISRPGP-----MGPPGLNGLQGE---KGDRGPTGPIGFPGADGSVGYPGD 891
Fly 892 RGDAGLPGV---------SGRPGIVGEKGDVGPIGPAGVAGPPGVPGI---DGVRGRDGAKGEPG 944
Fly 945 S---PGLVGMPGNKGDRGAPGNDGPKGFAGVTGAPGKRGPAGIPGVSGAKGDKGATGLTGNDGPV 1006
Fly 1007 GGRGPPGAPGLMGIKGDQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGLPGDASEKGQKGEPGP 1071
Fly 1072 SGLRGDTGPAGTPGWPGE------------KGLPGLAVH---GRAGPPGEKGDQGRSGIDGRDGI 1121
Fly 1122 NGEKGEQGLQGVWGQP---GEKGSVGAPGIPGAPGMDGLPGAAGAPGAVGYPGDRGDKGEPGLSG 1183
Fly 1184 LPGLKGETGPVGLQGFTGAPGPKGERGIRGQPGLPATVPDIRGDKGSQGERGYTGEKGEQGERG- 1247
Fly 1248 LTGPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDIGPRGEIGYPGVTIKGEKGLPGRPGRNGRQG 1312
Fly 1313 LIGAPGLIGERGLPGLAGEPGLVGLPGPIGPAGSKGERGLAGSPGQPGQDGFPGAPGLKGD---T 1374
Fly 1375 GPQGFKGERGLNGFEGQKGDKGDRGLQGPSGLPGLVGQKGDTGYPGLNGNDGPVGAPGERGFTGP 1439
Fly 1440 KGRDGRDGTPGLPGQKGEPGMLPPPGPKGEPGQPGRNGPKGEPGRPGERGLIGIQGERGEKGERG 1504
Fly 1505 LIGETGNVGRPGPKGDRGEPGERGYEGAIGLIGQKGEPGAPAPAALDYL----------TGILI- 1558
Fly 1559 ------------TRHSQSETVPACSAGHTE 1576 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Col4a1 | NP_723044.1 | Collagen | 104..161 | CDD:189968 | 25/59 (42%) |
Collagen | 322..380 | CDD:189968 | 33/71 (46%) | ||
Collagen | 413..465 | CDD:189968 | 25/53 (47%) | ||
Collagen | 499..561 | CDD:189968 | 33/73 (45%) | ||
Collagen | 574..632 | CDD:189968 | 31/60 (52%) | ||
Collagen | 657..714 | CDD:189968 | 32/71 (45%) | ||
Collagen | 765..824 | CDD:189968 | 31/59 (53%) | ||
Collagen | 854..911 | CDD:189968 | 32/73 (44%) | ||
Collagen | 884..943 | CDD:189968 | 30/70 (43%) | ||
Collagen | 923..982 | CDD:189968 | 31/64 (48%) | ||
Collagen | 1028..1085 | CDD:189968 | 27/56 (48%) | ||
Collagen | 1229..1287 | CDD:189968 | 24/58 (41%) | ||
Collagen | 1318..1376 | CDD:189968 | 26/60 (43%) | ||
Collagen | 1399..1458 | CDD:189968 | 30/58 (52%) | ||
Collagen | 1477..1534 | CDD:189968 | 28/56 (50%) | ||
C4 | 1555..1662 | CDD:128421 | 9/35 (26%) | ||
C4 | 1663..1777 | CDD:128421 | |||
Col7a1 | NP_031764.2 | Nonhelical region (NC1). /evidence=ECO:0000255 | 18..1254 | 19/84 (23%) | |
vWA_collagen_alphaI-XII-like | 38..202 | CDD:238759 | |||
fn3 | 234..318 | CDD:278470 | |||
FN3 | 334..414 | CDD:238020 | |||
fn3 | 427..488 | CDD:278470 | |||
fn3 | 510..588 | CDD:278470 | |||
FN3 | 599..681 | CDD:238020 | |||
fn3 | 688..765 | CDD:278470 | |||
fn3 | 778..856 | CDD:278470 | |||
fn3 | 874..946 | CDD:278470 | |||
FN3 | 959..1046 | CDD:238020 | |||
VWA | 1055..1223 | CDD:278519 | 11/51 (22%) | ||
Cell attachment site. /evidence=ECO:0000255 | 1171..1173 | ||||
Triple-helical region. /evidence=ECO:0000255 | 1255..2775 | 707/1641 (43%) | |||
Interrupted collagenous region. /evidence=ECO:0000255 | 1255..1475 | 113/275 (41%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1259..1934 | 320/744 (43%) | |||
Collagen | 1398..1444 | CDD:189968 | 19/52 (37%) | ||
Collagen | 1470..1511 | CDD:189968 | 20/40 (50%) | ||
Collagen | 1560..1624 | CDD:189968 | 31/66 (47%) | ||
Collagen | 1601..1660 | CDD:189968 | 29/58 (50%) | ||
Collagen | 1643..1695 | CDD:189968 | 21/53 (40%) | ||
Collagen | 1839..1893 | CDD:189968 | 25/53 (47%) | ||
Collagen | 1875..1931 | CDD:189968 | 22/55 (40%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1960..2773 | 379/864 (44%) | |||
Cell attachment site. /evidence=ECO:0000255 | 2002..2004 | 0/1 (0%) | |||
Cell attachment site. /evidence=ECO:0000255 | 2063..2065 | 0/1 (0%) | |||
Collagen | 2099..2158 | CDD:189968 | 27/58 (47%) | ||
Collagen | 2233..2292 | CDD:189968 | 26/58 (45%) | ||
Collagen | 2275..2338 | CDD:189968 | 30/64 (47%) | ||
Collagen | 2448..2497 | CDD:189968 | 26/56 (46%) | ||
Collagen | 2481..2559 | CDD:189968 | 40/98 (41%) | ||
Collagen | 2530..2589 | CDD:189968 | 34/93 (37%) | ||
Collagen | 2575..2632 | CDD:189968 | 30/71 (42%) | ||
Cell attachment site. /evidence=ECO:0000255 | 2601..2603 | 0/1 (0%) | |||
Collagen | 2605..2664 | CDD:189968 | 30/61 (49%) | ||
Cell attachment site. /evidence=ECO:0000255 | 2631..2633 | 0/1 (0%) | |||
Collagen | 2641..2693 | CDD:189968 | 29/54 (54%) | ||
Nonhelical region (NC2). /evidence=ECO:0000255 | 2776..2944 | 10/56 (18%) | |||
KU | 2877..2932 | CDD:238057 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E33208_3BAFZ | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |