Sequence 1: | NP_723044.1 | Gene: | Col4a1 / 33727 | FlyBaseID: | FBgn0000299 | Length: | 1779 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_034061.2 | Gene: | Col4a1 / 12826 | MGIID: | 88454 | Length: | 1669 | Species: | Mus musculus |
Alignment Length: | 1866 | Identity: | 822/1866 - (44%) |
---|---|---|---|
Similarity: | 982/1866 - (52%) | Gaps: | 290/1866 - (15%) |
- Green bases have known domain annotations that are detailed below.
Fly 2 LPFWKRLLYAAVIAGALVGADAQFWKTAGTAGSIQDSVKHYNRNEPKFPIDDSYDIVDSAGVARG 66
Fly 67 DLPPKNCTAGYAGCVPKC-----IAEKGNRGLPGPLGPTGLKGEMGFPGMEGPSGDKGQKGDPGP 126
Fly 127 YGQRGDKGERGSPGLHGQAGVPGVQGPAGNPGAPGINGKDGCDGQDGIPGLEGLSGMPGPRGYAG 191
Fly 192 QLGSKGEKGEPAKENGDYAKGEKGEPG-----WRGTAGLAGPQGFPGEKGERGDSGPYGAKGPRG 251
Fly 252 EHGLKGEKGASCYGPMKPGAPGIKGEKGEPASSFPVKPTHTVMGPRGDMGQKGEPGLVGRKGEPG 316
Fly 317 -----PEGD---TGLDGQKGEKGLPGGP-----GDRGRQGNFGPPGSTGQKGDRGEPGLNGLPGN 368
Fly 369 PGQKGEPGRAGATGKPGLLGPPGPPGGGRGTPGPPGPKGPRGYVGAPGPQGLNGVDGLPGPQGYN 433
Fly 434 GQKGGAGLPGRPGNEGPPGKKGEKGTAGLNGPKGSIGPIGHPGPPGPEGQKGDAGLPGYGIQGSK 498
Fly 499 GDAGIPGYPGLKGSKGERGFKGNAGAPGDSKLGRPGTPGAAGA-----PGQKGDAGRPGTPGQ-- 556
Fly 557 -KGDMGIKGDVGGKCSSCRAGPKGDKGTSGLPGIPGKDGARGPPGERGYP------GERGHDGIN 614
Fly 615 GQTGPPGEKGEDGRTGLPGATGEPGKPALCDLSLIEPLKGDKGYPGAPGAKGVQGFKGAEGLPGI 679
Fly 680 PGPKGEFGFKGEKGLSGAPGNDGTPGRAGRDGYPGIPGQSIKGEPGFHGRDGAKGDKGSFGRSGE 744
Fly 745 KGEPGSCALDEIKMPA-KGNKGEPGQTGMPGPPGEDGSPGERGYTGLKGNTGPQGPPGVEGPRGL 808
Fly 809 NGPRGEKGNQGAVGVPGNPGKDGLRGIPGRNGQPGPRGEPGISRPGPMGPPGLNGLQGEKGDRGP 873
Fly 874 TGPIGFPGADGSVGYP---GDRGDAGLPGVSGRPGIVGEKGDVGPIGPAGVAGPPGVPGIDGVRG 935
Fly 936 RDGAKGEPGSPGLVG--MPGNKGDRGAPGNDGPKGFAGVTGAPGKRGPAGIPGVSGAKGDKGATG 998
Fly 999 LTGNDGPVGGRGPPGAPGLMGIKGDQGLAGAPGQQGLDGMPGEKGNQGFPGLDGP------PGLP 1057
Fly 1058 GDASEKGQKGEPGPSGLRGDTGPAGTPGWPGEKGLPGLAVHGRAGPPGEKGDQGRSGIDGRDGIN 1122
Fly 1123 GEKGEQGLQGVWGQPGEKGSVGAPGIPGAPGMDGLPGAAGAPG--------AVGYPGDRGDKGEP 1179
Fly 1180 GLSGLPGL---KGETGPVGLQGFTGAPGPKGERGIRGQPGLPATVPDIRGDKGSQGERGYTGEKG 1241
Fly 1242 EQGERGLTGPAGVAGAKGDRGLQGPPGAS-----------GLNGIPGAKGDIGPRGEIGYPGVTI 1295
Fly 1296 KGEKGLPGRPGRNGRQGLIGAPGLIGERGLPGLAGEPGLVGLPGPIGPAGSKGERGLAGSPGQPG 1360
Fly 1361 QDGFPGAPGLKGDTGPQGFKGERGLNGFEGQKGDKGDRGLQGPSGLPGLVGQKGDTGYPGLNGND 1425
Fly 1426 GPVGAPGERGFTGPKGRDGRDGTPGLPGQKGEPGMLPPPGP----KGEPGQPGRNGPKGEPGRPG 1486
Fly 1487 ERGLIGIQGERGEKGERGLIGETGNVGRPGPKGDRGEPGERGYEGAIGLIGQKGEPGAPAPAAL- 1550
Fly 1551 -----------DYLTGILITRHSQSETVPACSAGHTELWTGYSLLYVDGNDYAHNQDLGSPGSCV 1604
Fly 1605 PRFSTLPVLSCGQNNVCNYASRNDKTFWLTTNAAIP--MMPVENIEIRQYISRCVVCEAPANVIA 1667
Fly 1668 VHSQTIEVPDCPNGWEGLWIGYSFLMHTAVGNGGGGQALQSPGSCLEDFRATPFIECNGAKGTCH 1732
Fly 1733 FYETMTSFWMYNLESSQPFERPQQQTIKAGERQSHVSRCQVCMKNS 1778 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Col4a1 | NP_723044.1 | Collagen | 104..161 | CDD:189968 | 29/56 (52%) |
Collagen | 322..380 | CDD:189968 | 31/62 (50%) | ||
Collagen | 413..465 | CDD:189968 | 17/51 (33%) | ||
Collagen | 499..561 | CDD:189968 | 24/69 (35%) | ||
Collagen | 574..632 | CDD:189968 | 24/63 (38%) | ||
Collagen | 657..714 | CDD:189968 | 28/56 (50%) | ||
Collagen | 765..824 | CDD:189968 | 27/58 (47%) | ||
Collagen | 854..911 | CDD:189968 | 27/59 (46%) | ||
Collagen | 884..943 | CDD:189968 | 29/61 (48%) | ||
Collagen | 923..982 | CDD:189968 | 30/60 (50%) | ||
Collagen | 1028..1085 | CDD:189968 | 22/62 (35%) | ||
Collagen | 1229..1287 | CDD:189968 | 28/68 (41%) | ||
Collagen | 1318..1376 | CDD:189968 | 27/57 (47%) | ||
Collagen | 1399..1458 | CDD:189968 | 26/58 (45%) | ||
Collagen | 1477..1534 | CDD:189968 | 24/56 (43%) | ||
C4 | 1555..1662 | CDD:128421 | 60/108 (56%) | ||
C4 | 1663..1777 | CDD:128421 | 71/113 (63%) | ||
Col4a1 | NP_034061.2 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 47..1443 | 629/1466 (43%) | |
Triple-helical region | 173..1440 | 575/1332 (43%) | |||
Collagen | 275..331 | CDD:189968 | 27/63 (43%) | ||
Collagen | 510..585 | CDD:189968 | 26/82 (32%) | ||
Collagen | <645..688 | CDD:189968 | 20/42 (48%) | ||
Collagen | 690..745 | CDD:189968 | 24/54 (44%) | ||
Collagen | 737..788 | CDD:189968 | 22/51 (43%) | ||
Collagen | 839..896 | CDD:189968 | 27/59 (46%) | ||
Collagen | 876..935 | CDD:189968 | 28/61 (46%) | ||
Collagen | 975..1032 | CDD:189968 | 26/56 (46%) | ||
Collagen | 1058..1116 | CDD:189968 | 24/57 (42%) | ||
Collagen | 1088..1147 | CDD:189968 | 26/58 (45%) | ||
Collagen | 1269..1326 | CDD:189968 | 27/67 (40%) | ||
C4 | 1446..1552 | CDD:279721 | 49/109 (45%) | ||
C4 | 1556..1666 | CDD:279721 | 61/111 (55%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 164 | 1.000 | Domainoid score | I3922 |
eggNOG | 1 | 0.900 | - | - | E33208_3BAFZ | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 1346 | 1.000 | Inparanoid score | I143 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D41315at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000443 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100768 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR24023 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R2460 |
SonicParanoid | 1 | 1.000 | - | - | X1239 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
12 | 11.900 |