Sequence 1: | NP_723044.1 | Gene: | Col4a1 / 33727 | FlyBaseID: | FBgn0000299 | Length: | 1779 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_011241624.1 | Gene: | Col13a1 / 12817 | MGIID: | 1277201 | Length: | 760 | Species: | Mus musculus |
Alignment Length: | 1011 | Identity: | 342/1011 - (33%) |
---|---|---|---|
Similarity: | 404/1011 - (39%) | Gaps: | 355/1011 - (35%) |
- Green bases have known domain annotations that are detailed below.
Fly 198 EKGEPAKENGDYAKGEKGEPGWRGTAGLAG-----PQGFPGEKG--------------------- 236
Fly 237 ----------ERGDSGPYGAKGPRGEHGLKG------EKGASCYGPMKPGAPGIKGEKGEPASSF 285
Fly 286 PVKPTHTVMGPRGDMGQKGEPGLVGRKGEPGPEGDTGLDGQKGEKGLPGGPGDRGRQGNFGPPGS 350
Fly 351 TGQKGDRGEPGLNGLPGNPGQKGEPGRAGATGKPGLLGPPGPPGGGRGTPGPPGPKGPRGYVGAP 415
Fly 416 GPQG----LNGVDGLPGP----QGYNGQKGGAGLPGRPGNEGPPGKKGEKGTAGLNGPKGSIGPI 472
Fly 473 GHPGPPGPEGQKGDAGLPGYGIQGSKGDAGIPGYPGLKGSKGERGFKGNAGAPGDSKLGRPGTPG 537
Fly 538 AAGAPGQKGDAGRPGTPGQKGDMGIKGDVGGKCSSCRAGPKGDKGTSGLPGIPGKDGARGPPGER 602
Fly 603 GYPGERGHDGINGQTGPPGEKGEDGRTGLPGATGEPGKPALCDLSLIEPLKGDKGYPGAPGAKGV 667
Fly 668 QGFKGAEGLPGIPGPKGEFGFKGEKGLSGAPGNDGTPGRAGRDGYPGIPGQSIKGEPGFHGRDGA 732
Fly 733 KGDKGSFGRSGEKGEPGSCALDEIK-MPAKGNKGEPGQTGMPGPPGEDGSPGERGYTGLKGNTGP 796
Fly 797 QGPPGVEGPRGLNGPRGEKGNQGAVGVPGNPGKDGLRGIPGRNGQPGPRGEPGISRPGPMGPPGL 861
Fly 862 NGLQGEKGDRGPTGPIGFPGADGSVGYPGDRGDAGLPGVSGRPGIVGEKGDVGPIGPAGVAGPPG 926
Fly 927 VPGIDGVRGRDGAKGEPGSPGLVGMPGNKGDRGAPGNDGPKGFAGVTGAPGKRGPAGIPGVSGAK 991
Fly 992 GDKGATGLTGNDGPVGGRGPPGAPGLMGIKGDQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGL 1056
Fly 1057 PGDASEKGQKGEPGPSGLRGDTGPAGTPGWPGEKGLPGLAVHGRAGPPGEKGDQGRSGIDGRDGI 1121
Fly 1122 NGEKGEQGLQGVWGQPGEKGSVGAPGIPGAPGMDGL 1157 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Col4a1 | NP_723044.1 | Collagen | 104..161 | CDD:189968 | |
Collagen | 322..380 | CDD:189968 | 26/57 (46%) | ||
Collagen | 413..465 | CDD:189968 | 20/59 (34%) | ||
Collagen | 499..561 | CDD:189968 | 27/61 (44%) | ||
Collagen | 574..632 | CDD:189968 | 18/57 (32%) | ||
Collagen | 657..714 | CDD:189968 | 10/56 (18%) | ||
Collagen | 765..824 | CDD:189968 | 29/58 (50%) | ||
Collagen | 854..911 | CDD:189968 | 19/56 (34%) | ||
Collagen | 884..943 | CDD:189968 | 20/58 (34%) | ||
Collagen | 923..982 | CDD:189968 | 18/58 (31%) | ||
Collagen | 1028..1085 | CDD:189968 | 27/56 (48%) | ||
Collagen | 1229..1287 | CDD:189968 | |||
Collagen | 1318..1376 | CDD:189968 | |||
Collagen | 1399..1458 | CDD:189968 | |||
Collagen | 1477..1534 | CDD:189968 | |||
C4 | 1555..1662 | CDD:128421 | |||
C4 | 1663..1777 | CDD:128421 | |||
Col13a1 | XP_011241624.1 | Collagen | 147..220 | CDD:189968 | 40/86 (47%) |
Collagen | 515..573 | CDD:189968 | 30/95 (32%) | ||
Collagen | 658..709 | CDD:189968 | 29/91 (32%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |