Sequence 1: | NP_723044.1 | Gene: | Col4a1 / 33727 | FlyBaseID: | FBgn0000299 | Length: | 1779 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_006523622.1 | Gene: | Col11a2 / 12815 | MGIID: | 88447 | Length: | 1820 | Species: | Mus musculus |
Alignment Length: | 1621 | Identity: | 609/1621 - (37%) |
---|---|---|---|
Similarity: | 727/1621 - (44%) | Gaps: | 432/1621 - (26%) |
- Green bases have known domain annotations that are detailed below.
Fly 50 PIDDSYDIVDSAGVARGDLPP--KNCTAGYAG-------CVPKCIAEKGNRGLPGPLGPTGLKGE 105
Fly 106 MGF-------------PGMEGP---SGDKGQKGDPGPYGQRGDKGERGSPGLHGQAGVPGVQGPA 154
Fly 155 GNPGA----PGINGKDGCDGQDGIPGLE------------GLSGMPGPRGYAGQLGSKGEKGEPA 203
Fly 204 KENGDYAKGEKGEPGWRGTAGLAGPQGF---PGEKGERGDSGPYGAKGPRGEHGLKGEKGASCYG 265
Fly 266 PMKPGAPGIKGEKGEPASSFPVKPTHTVMGPRGDMGQKGEPGLVGRKGEPGPEGDTGLDGQKGEK 330
Fly 331 GLPGGPGDRGRQGNFGPPGSTGQKGDRGEPGLNGLPGNPGQKGEPGRAGATGKPGLLGPPGPPGG 395
Fly 396 GRGTPGPPGPKGPRGYVGAPGPQGLNGVDGLPGPQGYNGQKGGAGLPGRPGNEGPPGKKGEKGTA 460
Fly 461 GLNGPKGSIGPIGHPGPPGPEGQKGDAGLPGYGIQGSKGDAGIPGYPGLKGSKGERGFKGNAGAP 525
Fly 526 GDSKLGRPGTPGAAGAPGQKGDAGRPGTPGQKGDMGIKGDVGGKCSSCRAGPKGDKGTSGLPGIP 590
Fly 591 GKDGARGPPGERGYP------GERGHDGINGQTGPPGEKGEDGRTGLPGATGEPGKPALCDLSLI 649
Fly 650 EPLKGDKGYPGAPGAKGVQGFKGAEGLPGIPGPKGEFGFKGEKGLSGAPGNDGTPGRAGRDGYPG 714
Fly 715 IPGQSIKGEPGFHGRDGAKGDKGSFGRSGEKGEPGSCALDEIKMPAKGNKGEPGQTGMPGPPGED 779
Fly 780 GSPGERGYTGLKGNTGPQGPPGVEGPRGLNGPRGEKGNQGAVGVPGNPGKDGLRGIPGRNGQPGP 844
Fly 845 RGEPGI-SRPGPMGPPGLNGLQGEKGDRGPTGPIGFPGADGSVGYPGDRGDAGLPGVSGRPGIVG 908
Fly 909 EKGDVGPIGPAGVAGPPGVP---GIDGVRGRDGAKGEPGSPGLVGMPGNKGDRGAPGNDGPKGFA 970
Fly 971 GVTGAPGKRGPAGIPGVSGAKGDKGATGLTGNDGPVGGRGPPGAPGLMGIKGDQGLAGAPGQQGL 1035
Fly 1036 DGMP---GEKGNQGFPGLDGPPGLPGDASEKGQKGEPGPSGLRGDTGPAGTPGWPGEKGLPGLAV 1097
Fly 1098 HGRAGPPGEKGDQGRSGIDGRDGINGEKGEQGLQGVWGQPGEKGSVGAPGIPGAPGMDGLPGAAG 1162
Fly 1163 APGAVGYPGDRGDKGEPGLSGLPGLKGETGPVGLQGFTGAPGPKGERGIRGQPGLPATVPDIRGD 1227
Fly 1228 KGSQGERGYTGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDIGPRGEIGYPG 1292
Fly 1293 VTIKGEKGLPGRPGRNGRQGLIGAPGLIGERGLPGLAGEPGLVGLPGPIGPAGSKGERGLAGSPG 1357
Fly 1358 QPGQDGFPGAPGLKGDTGPQGFKGERGLNGF---EGQKGDKGDRGLQGPSGLPGLVGQKGDTGYP 1419
Fly 1420 GLNGNDGPVGAPGERGFTGPKGRDGRDGTPGLPGQKGEPGMLPPPGPKGEPGQPGRNGPKGEPGR 1484
Fly 1485 PGERGLIGIQGERGEKGERGLIGETGNVGRP----GPKGDRGEPGERGYEGAIGLIGQKGEP--G 1543
Fly 1544 AP-APAALDYLTGILI--------------TRHSQSETVPACSAGHTELWTGYSLLYVDGN 1589 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Col4a1 | NP_723044.1 | Collagen | 104..161 | CDD:189968 | 31/76 (41%) |
Collagen | 322..380 | CDD:189968 | 22/57 (39%) | ||
Collagen | 413..465 | CDD:189968 | 22/51 (43%) | ||
Collagen | 499..561 | CDD:189968 | 23/61 (38%) | ||
Collagen | 574..632 | CDD:189968 | 24/63 (38%) | ||
Collagen | 657..714 | CDD:189968 | 27/56 (48%) | ||
Collagen | 765..824 | CDD:189968 | 24/58 (41%) | ||
Collagen | 854..911 | CDD:189968 | 26/56 (46%) | ||
Collagen | 884..943 | CDD:189968 | 28/61 (46%) | ||
Collagen | 923..982 | CDD:189968 | 27/61 (44%) | ||
Collagen | 1028..1085 | CDD:189968 | 26/59 (44%) | ||
Collagen | 1229..1287 | CDD:189968 | 23/57 (40%) | ||
Collagen | 1318..1376 | CDD:189968 | 19/57 (33%) | ||
Collagen | 1399..1458 | CDD:189968 | 27/58 (47%) | ||
Collagen | 1477..1534 | CDD:189968 | 15/60 (25%) | ||
C4 | 1555..1662 | CDD:128421 | 12/49 (24%) | ||
C4 | 1663..1777 | CDD:128421 | |||
Col11a2 | XP_006523622.1 | TSPN | 32..213 | CDD:214560 | |
PHA03247 | <230..518 | CDD:223021 | 40/119 (34%) | ||
Collagen | 583..642 | CDD:189968 | 29/67 (43%) | ||
Collagen | 631..689 | CDD:189968 | 31/86 (36%) | ||
Collagen | 745..804 | CDD:189968 | 33/70 (47%) | ||
Collagen | 811..869 | CDD:189968 | 27/70 (39%) | ||
Collagen | 853..912 | CDD:189968 | 27/76 (36%) | ||
Collagen | 889..946 | CDD:189968 | 23/83 (28%) | ||
Collagen | 1204..1253 | CDD:189968 | 24/60 (40%) | ||
Collagen | 1279..1325 | CDD:189968 | 24/59 (41%) | ||
Collagen | 1375..1433 | CDD:189968 | 28/73 (38%) | ||
Collagen | 1411..1470 | CDD:189968 | 27/78 (35%) | ||
COLFI | 1624..1819 | CDD:197483 | 13/54 (24%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E33208_3BAFZ | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |